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    TNPO1P1 transportin 1 pseudogene 1 [ Homo sapiens (human) ]

    Gene ID: 100418919, updated on 17-Sep-2024

    Summary

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    Official Symbol
    TNPO1P1provided by HGNC
    Official Full Name
    transportin 1 pseudogene 1provided by HGNC
    Primary source
    HGNC:HGNC:45120
    See related
    Ensembl:ENSG00000225423 AllianceGenome:HGNC:45120
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See TNPO1P1 in Genome Data Viewer
    Location:
    10q23.1
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (84390899..84392246)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (85269391..85270739)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (86150655..86152002)

    Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 858 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3678 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:86057631-86058131 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:86073792-86074670 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2554 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3679 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3680 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3681 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_17641 Neighboring gene coiled-coil serine rich protein 2 Neighboring gene Sharpr-MPRA regulatory region 13339 Neighboring gene ribosomal protein L12 pseudogene 29 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr10:86224343-86225178 Neighboring gene calcyclin binding protein pseudogene 1 Neighboring gene MPRA-validated peak1039 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_17686 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:86284877-86285378 Neighboring gene H3K27ac hESC enhancer GRCh37_chr10:86285379-86285878 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:86295009-86295508 Neighboring gene NANOG hESC enhancer GRCh37_chr10:86296761-86297465 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:86302795-86303294 Neighboring gene RPS3A pseudogene 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Markers

    Homology

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_025528.2 

      Range
      101..1448
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

      Range
      84390899..84392246
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060934.1 Alternate T2T-CHM13v2.0

      Range
      85269391..85270739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
    Molecular Biology Databases
    Research Materials