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    HS3ST4 heparan sulfate-glucosamine 3-sulfotransferase 4 [ Homo sapiens (human) ]

    Gene ID: 9951, updated on 2-Nov-2024

    Summary

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    Official Symbol
    HS3ST4provided by HGNC
    Official Full Name
    heparan sulfate-glucosamine 3-sulfotransferase 4provided by HGNC
    Primary source
    HGNC:HGNC:5200
    See related
    Ensembl:ENSG00000182601 MIM:604059; AllianceGenome:HGNC:5200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    30ST4; 3OST4; 3-OST-4; h3-OST-4
    Summary
    This gene encodes the enzyme heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4. This enzyme generates 3-O-sulfated glucosaminyl residues in heparan sulfate. Cell surface heparan sulfate is used as a receptor by herpes simplex virus type 1 (HSV-1), and expression of this gene is thought to play a role in HSV-1 pathogenesis. [provided by RefSeq, Jul 2008]
    Expression
    Biased expression in brain (RPKM 7.8), spleen (RPKM 1.0) and 1 other tissue See more
    Orthologs
    mouse all
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    Genomic context

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    See HS3ST4 in Genome Data Viewer
    Location:
    16p12.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (25691959..26137685)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (25968488..26414068)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (25703280..26149006)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371147 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:25564716-25565915 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:25580065-25581264 Neighboring gene NANOG hESC enhancer GRCh37_chr16:25586609-25587370 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:25644366-25645565 Neighboring gene uncharacterized LOC105369297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:25704024-25704524 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:25704525-25705025 Neighboring gene TNF receptor associated factor 7 pseudogene Neighboring gene ReSE screen-validated silencer GRCh37_chr16:25855925-25856182 Neighboring gene Sharpr-MPRA regulatory region 8309 Neighboring gene NANOG hESC enhancer GRCh37_chr16:25896223-25896797 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:25899968-25901167 Neighboring gene NANOG hESC enhancer GRCh37_chr16:25959776-25960299 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:25961820-25962673 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:25962674-25963526 Neighboring gene ReSE screen-validated silencer GRCh37_chr16:26055617-26055798 Neighboring gene RNA, 5S ribosomal pseudogene 405 Neighboring gene microRNA 548w Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 3 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 16 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr16:26137874-26139073 Neighboring gene NANOG hESC enhancer GRCh37_chr16:26144955-26145467 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:26188562-26189392 Neighboring gene uncharacterized LOC105371149 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:26290511-26291012 Neighboring gene uncharacterized LOC105371150

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Heparan sulfate 3-O-sulfotransferase 4 is genetically associated with herpes zoster and enhances varicella-zoster virus-mediated fusogenic activity. Ohka S, et al. Mol Pain, 2021 Jan-Dec. PMID 34904858, Free PMC Article
    2. A role for 3-O-sulfotransferase isoform-4 in assisting HSV-1 entry and spread. Tiwari V, et al. Biochem Biophys Res Commun, 2005 Dec 16. PMID 16259945
    3. Characterization of a heparan sulfate octasaccharide that binds to herpes simplex virus type 1 glycoprotein D. Liu J, et al. J Biol Chem, 2002 Sep 6. PMID 12080045
    4. Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium. Debette S, et al. Biol Psychiatry, 2015 Apr 15. PMID 25648963, Free PMC Article
    5. Tetrasulfated disaccharide unit in heparan sulfate: enzymatic formation and tissue distribution. Mochizuki H, et al. J Biol Chem, 2008 Nov 7. PMID 18757372, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Heparan sulfate 3-O-sulfotransferase 4 is genetically associated with herpes zoster and enhances varicella-zoster virus-mediated fusogenic activity.
      Title: Heparan sulfate 3-O-sulfotransferase 4 is genetically associated with herpes zoster and enhances varicella-zoster virus-mediated fusogenic activity.
    2. This study provided that additional genome-wide associations, near HS3ST4 were identified and other putative modulators of memory performance were revealed by a pathway approach and hippocampal gene expression analyses.
      Title: Genome-wide studies of verbal declarative memory in nondemented older people: the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium.
    3. Clinical trial of gene-disease association and gene-environment interaction. (HuGE Navigator)
      Title: Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.
    4. The 3OST-2 and -4 are specifically expressed in brain.
      Title: Tetrasulfated disaccharide unit in heparan sulfate: enzymatic formation and tissue distribution.
    5. 3-OST-2 and 3-OST-4 are the major neural gD-type 3-OSTs, and so are prime candidates for participating in HS-dependent neurobiologic events.
      Title: The principal neuronal gD-type 3-O-sulfotransferases and their products in central and peripheral nervous system tissues.
    Submit: New GeneRIF Correction

    Phenotypes

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    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    EBI GWAS Catalog

    Description
    Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
    EBI GWAS Catalog
    Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
    EBI GWAS Catalog

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heparan sulfate proteoglycan biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in heparan sulfate proteoglycan metabolic process NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    heparan sulfate glucosamine 3-O-sulfotransferase 4
    Names
    heparan sulfate (glucosamine) 3-O-sulfotransferase 4
    heparan sulfate 3-O-sulfotransferase 4
    heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4
    NP_006031.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_006040.3 → NP_006031.2  heparan sulfate glucosamine 3-O-sulfotransferase 4

      See identical proteins and their annotated locations for NP_006031.2

      Status: REVIEWED

      Source sequence(s)
      AC092141, AC093511, AF105378
      Consensus CDS
      CCDS53995.1
      UniProtKB/Swiss-Prot
      Q5QI42, Q8NDC2, Q9Y661
      Related
      ENSP00000330606.5, ENST00000331351.6
      Conserved Domains (1) summary
      pfam00685
      Location:197 → 434
      Sulfotransfer_1; Sulfotransferase domain

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      25691959..26137685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      25968488..26414068
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9Y661.3 GenPept UniProtKB/Swiss-Prot:Q9Y661

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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