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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001013580.4 → NP_001013598.1 partitioning defective 3 homolog isoform 2
See identical proteins and their annotated locations for NP_001013598.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2, also called PAR-3o2) differs in the 5' and 3' UTR and has multiple coding region differences compared to variant 5. These differences cause translation initiation at a downstream AUG and an isoform (2) with a shorter N-terminus and shorter and distinct C-terminus compared to isoform 5.
- Source sequence(s)
-
AC105981, AC132321
- Consensus CDS
-
CCDS40523.1
- UniProtKB/TrEMBL
-
Q8BPQ6
- Related
- ENSMUSP00000125612.2, ENSMUST00000160717.8
- Conserved Domains (1) summary
-
- cd00992
Location:330 → 409
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
NM_001013581.3 → NP_001013599.1 partitioning defective 3 homolog isoform 1
See identical proteins and their annotated locations for NP_001013599.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (1, also called PAR-3o1) differs in the 5' and 3' UTR and has multiple coding region differences compared to variant 5. These differences cause translation initiation at a downstream AUG and an isoform (1) with a shorter N-terminus and shorter and distinct C-terminus compared to isoform 5.
- Source sequence(s)
-
AC105981, AC132321
- Consensus CDS
-
CCDS22789.1
- UniProtKB/TrEMBL
- A0A0R4J1Y4, E0CZE2
- Related
- ENSMUSP00000124162.2, ENSMUST00000162456.8
- Conserved Domains (1) summary
-
- cd00992
Location:330 → 409
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
-
NM_001122850.2 → NP_001116322.1 partitioning defective 3 homolog isoform 4
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 3' UTR and coding region compared to variant 5. The resulting isoform (4) has a shorter and distinct C-terminus compared to isoform 5.
- Source sequence(s)
-
AC105981, AC132321, AC155818, AC165964
- Consensus CDS
-
CCDS52712.1
- UniProtKB/TrEMBL
- E9PYJ2, Q8BPQ4
- Related
- ENSMUSP00000124319.2, ENSMUST00000162907.8
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:1 → 146
- DUF3534; Domain of unknown function (DUF3534)
-
NM_001309391.1 → NP_001296320.1 partitioning defective 3 homolog isoform 5
See identical proteins and their annotated locations for NP_001296320.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) encodes isoform 5.
- Source sequence(s)
-
BC090616
- Consensus CDS
-
CCDS80945.1
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- UniProtKB/TrEMBL
-
A5D6P2
- Related
- ENSMUSP00000125453.2, ENSMUST00000160272.8
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:1 → 146
- DUF3534; Domain of unknown function (DUF3534)
-
NM_001309392.1 → NP_001296321.1 partitioning defective 3 homolog isoform 6
See identical proteins and their annotated locations for NP_001296321.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks an in-frame exon in the central coding region, compared to variant 5. The encoded isoform (6) is shorter than isoform 5.
- Source sequence(s)
-
BC090616
- Consensus CDS
-
CCDS80946.1
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- UniProtKB/TrEMBL
-
B7ZNY3
- Related
- ENSMUSP00000026921.7, ENSMUST00000026921.13
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:1 → 146
- DUF3534; Domain of unknown function (DUF3534)
-
NM_001363431.1 → NP_001350360.1 partitioning defective 3 homolog isoform 7
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) uses an alternate in-frame splice junction compared to variant 5. The resulting isoform (7) has the same N- and C-termini but is shorter compared to isoform 5.
- Source sequence(s)
-
AC102819, AC105981, AC132321, AC155818, AC165964
- UniProtKB/TrEMBL
- B2RUK1, F6S7Z1
- Related
- ENSMUSP00000124718.2, ENSMUST00000162665.8
- Conserved Domains (3) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam06495
Location:1117 → 1187
- Transformer; Fruit fly transformer protein
- pfam12053
Location:1 → 146
- DUF3534; Domain of unknown function (DUF3534)
-
NM_001363432.1 → NP_001350361.1 partitioning defective 3 homolog isoform 8
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) represents the longest transcript and encodes the longest isoform (8).
- Source sequence(s)
-
AC102819, AC105981, AC132321, AC155818, AC165964
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:1 → 146
- DUF3534; Domain of unknown function (DUF3534)
-
NM_033620.2 → NP_296369.2 partitioning defective 3 homolog isoform 3
See identical proteins and their annotated locations for NP_296369.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) uses an alternate in-frame splice site in the central coding region, compared to variant 5. The encoded isoform (3) is shorter than isoform 5.
- Source sequence(s)
-
BC090616
- Consensus CDS
-
CCDS22788.1
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- UniProtKB/TrEMBL
-
G3XA13
- Related
- ENSMUSP00000124282.2, ENSMUST00000162309.8
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:1 → 146
- DUF3534; Domain of unknown function (DUF3534)
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000074.7 Reference GRCm39 C57BL/6J
- Range
-
127790131..128338767
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_006531520.3 → XP_006531583.1 partitioning defective 3 homolog isoform X1
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_006531523.3 → XP_006531586.1 partitioning defective 3 homolog isoform X2
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_006531524.3 → XP_006531587.1 partitioning defective 3 homolog isoform X3
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_006531527.3 → XP_006531590.1 partitioning defective 3 homolog isoform X5
- UniProtKB/TrEMBL
-
F6S7Z1
- Conserved Domains (3) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam06495
Location:1120 → 1190
- Transformer; Fruit fly transformer protein
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_006531529.3 → XP_006531592.1 partitioning defective 3 homolog isoform X10
- UniProtKB/TrEMBL
-
E0CZE2
- Related
- ENSMUSP00000125450.2, ENSMUST00000162602.8
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_006531530.3 → XP_006531593.1 partitioning defective 3 homolog isoform X11
- UniProtKB/TrEMBL
-
E0CZE2
- Related
- ENSMUSP00000124934.2, ENSMUST00000159537.8
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_030243870.1 → XP_030099730.1 partitioning defective 3 homolog isoform X13
- UniProtKB/TrEMBL
-
E0CXR8
- Related
- ENSMUSP00000124141.2, ENSMUST00000160581.8
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_006531532.3 → XP_006531595.1 partitioning defective 3 homolog isoform X14
- UniProtKB/TrEMBL
-
E0CXR8
- Related
- ENSMUSP00000125064.2, ENSMUST00000161355.8
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_006531531.3 → XP_006531594.1 partitioning defective 3 homolog isoform X12
- UniProtKB/TrEMBL
-
E0CZE2
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_006531533.3 → XP_006531596.1 partitioning defective 3 homolog isoform X15
- UniProtKB/TrEMBL
-
Q8BPQ4
- Conserved Domains (2) summary
-
- cd00992
Location:465 → 544
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_006531526.3 → XP_006531589.1 partitioning defective 3 homolog isoform X4
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- Conserved Domains (2) summary
-
- cd00992
Location:437 → 516
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_030243868.1 → XP_030099728.1 partitioning defective 3 homolog isoform X8
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- Conserved Domains (2) summary
-
- cd00992
Location:437 → 516
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_030243867.1 → XP_030099727.1 partitioning defective 3 homolog isoform X6
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- Conserved Domains (2) summary
-
- cd00992
Location:437 → 516
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_030243869.1 → XP_030099729.1 partitioning defective 3 homolog isoform X9
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- Conserved Domains (2) summary
-
- cd00992
Location:437 → 516
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_036154397.1 → XP_036010290.1 partitioning defective 3 homolog isoform X7
- UniProtKB/Swiss-Prot
- Q58T10, Q58T11, Q8CB21, Q99NH2
- Conserved Domains (2) summary
-
- cd00992
Location:437 → 516
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_030243872.1 → XP_030099732.1 partitioning defective 3 homolog isoform X17
- UniProtKB/TrEMBL
-
Q8BPQ4
- Conserved Domains (2) summary
-
- cd00992
Location:437 → 516
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins
-
XM_030243871.1 → XP_030099731.1 partitioning defective 3 homolog isoform X16
- UniProtKB/TrEMBL
-
Q8BPQ4
- Conserved Domains (2) summary
-
- cd00992
Location:437 → 516
- PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
- pfam12053
Location:2 → 83
- DUF3534; N-terminal of Par3 and HAL proteins