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    znf852 zinc finger protein 852 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 733842, updated on 25-Apr-2024

    Summary

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    Official Symbol
    znf852provided by Xenbase
    Official Full Name
    zinc finger protein 852provided by Xenbase
    Primary source
    Xenbase:XB-GENE-6460608
    See related
    Ensembl:ENSXETG00000037850
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
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    Genomic context

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    See znf852 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (6726637..6734552)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683508.1 (290273..297373)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 250 Neighboring gene uncharacterized LOC116411654 Neighboring gene zinc finger protein 816 Neighboring gene uncharacterized LOC100495777 Neighboring gene small nucleolar RNA SNORA9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 852
    Names
    novel zinc finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045593.1 → NP_001039058.1  zinc finger protein 852

      See identical proteins and their annotated locations for NP_001039058.1

      Status: PROVISIONAL

      Source sequence(s)
      CR848596
      UniProtKB/TrEMBL
      F7E4K6, Q28DU3
      Conserved Domains (3) summary
      COG5048
      Location:109 → 319
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:172 → 192
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd20908
      Location:170 → 222
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      6726637..6734552
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012954622.3 → XP_012810076.1  zinc finger protein 852 isoform X1

      See identical proteins and their annotated locations for XP_012810076.1

      UniProtKB/TrEMBL
      F7E4K6, Q28DU3
      Conserved Domains (3) summary
      COG5048
      Location:109 → 319
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:172 → 192
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd20908
      Location:170 → 222
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    2. XM_018089950.2 → XP_017945439.1  zinc finger protein 852 isoform X1

      UniProtKB/TrEMBL
      F7E4K6, Q28DU3
      Conserved Domains (3) summary
      COG5048
      Location:109 → 319
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:172 → 192
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd20908
      Location:170 → 222
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins

    3. XM_031903415.1 → XP_031759275.1  zinc finger protein 852 isoform X1

      UniProtKB/TrEMBL
      F7E4K6, Q28DU3
      Related
      ENSXETP00000095113.1, ENSXETT00000086658.2
      Conserved Domains (3) summary
      COG5048
      Location:109 → 319
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:172 → 192
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd20908
      Location:170 → 222
      SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
    Nucleotide Protein Strain
    Heading Accession and Version

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