U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    pard3 par-3 family cell polarity regulator [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 733833, updated on 4-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    pard3provided by Xenbase
    Official Full Name
    par-3 family cell polarity regulatorprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-490065
    See related
    Ensembl:ENSXETG00000006955 AllianceGenome:Xenbase:XB-GENE-490065
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    baz; asip; par3; par-3; pard3a; bazooka; se2-5t2; se2-5l16; se2-5lt1; par3alpha
    Summary
    Predicted to be located in bicellular tight junction and endomembrane system. Orthologous to human PARD3 (par-3 family cell polarity regulator). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See pard3 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (21710476..22057694)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (13476559..13821615)

    Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105947699 Neighboring gene cAMP responsive element modulator Neighboring gene cullin 2 Neighboring gene neuropilin 1 Neighboring gene integrin subunit beta 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in bicellular tight junction IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in endomembrane system IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    partitioning defective 3 homolog
    Names
    par-3 partitioning defective 3 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      21710476..22057694
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004915463.4 → XP_004915520.1  partitioning defective 3 homolog isoform X1

      UniProtKB/TrEMBL
      A0A6I8PWP7, A0A6I8SFX3
      Related
      ENSXETP00000097167.1, ENSXETT00000075153.2
      Conserved Domains (3) summary
      smart00228
      Location:457 → 547
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:592 → 680
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam12053
      Location:2 → 83
      DUF3534; N-terminal of Par3 and HAL proteins

    2. XM_004915468.4 → XP_004915525.1  partitioning defective 3 homolog isoform X6

      UniProtKB/TrEMBL
      A0A6I8PWP7, A0A8J0R5J3
      Conserved Domains (3) summary
      smart00228
      Location:413 → 503
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:548 → 636
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam12053
      Location:2 → 83
      DUF3534; N-terminal of Par3 and HAL proteins

    3. XM_012965666.3 → XP_012821120.1  partitioning defective 3 homolog isoform X8

      UniProtKB/TrEMBL
      A0A6I8PWP7, A0A6I8SQZ9
      Related
      ENSXETP00000097203.2, ENSXETT00000073317.2
      Conserved Domains (3) summary
      smart00228
      Location:413 → 503
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:548 → 636
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam12053
      Location:2 → 83
      DUF3534; N-terminal of Par3 and HAL proteins

    4. XM_012965667.3 → XP_012821121.1  partitioning defective 3 homolog isoform X9

      UniProtKB/TrEMBL
      A0A6I8PWP7, A0A8J0SSA1
      Conserved Domains (3) summary
      smart00228
      Location:413 → 503
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:548 → 636
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam12053
      Location:2 → 83
      DUF3534; N-terminal of Par3 and HAL proteins

    5. XM_004915467.4 → XP_004915524.1  partitioning defective 3 homolog isoform X5

      UniProtKB/TrEMBL
      A0A6I8PWP7, A0A8J0R538
      Conserved Domains (3) summary
      smart00228
      Location:457 → 547
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:592 → 680
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam12053
      Location:2 → 83
      DUF3534; N-terminal of Par3 and HAL proteins

    6. XM_004915469.4 → XP_004915526.1  partitioning defective 3 homolog isoform X7

      UniProtKB/TrEMBL
      A0A6I8PWP7, A0A6I8SJ51
      Related
      ENSXETP00000092272.2, ENSXETT00000101443.2
      Conserved Domains (3) summary
      smart00228
      Location:457 → 547
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:592 → 680
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam12053
      Location:2 → 83
      DUF3534; N-terminal of Par3 and HAL proteins

    7. XM_004915464.4 → XP_004915521.1  partitioning defective 3 homolog isoform X2

      UniProtKB/TrEMBL
      A0A6I8PWP7, A0A8J0R0F7
      Conserved Domains (3) summary
      smart00228
      Location:457 → 547
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:592 → 680
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam12053
      Location:1 → 146
      DUF3534; Domain of unknown function (DUF3534)

    8. XM_004915466.4 → XP_004915523.1  partitioning defective 3 homolog isoform X4

      UniProtKB/TrEMBL
      A0A6I8PWP7, A0A6I8RMF4
      Related
      ENSXETP00000081875.2, ENSXETT00000078761.2
      Conserved Domains (3) summary
      smart00228
      Location:457 → 547
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:592 → 680
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam12053
      Location:2 → 83
      DUF3534; N-terminal of Par3 and HAL proteins

    9. XM_002935165.4 → XP_002935211.1  partitioning defective 3 homolog isoform X3

      UniProtKB/TrEMBL
      A0A6I8PWP7, A0A6I8Q7C0
      Related
      ENSXETP00000065455.2, ENSXETT00000089918.2
      Conserved Domains (3) summary
      smart00228
      Location:457 → 547
      PDZ; Domain present in PSD-95, Dlg, and ZO-1/2
      cd00992
      Location:592 → 680
      PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
      pfam12053
      Location:2 → 83
      DUF3534; N-terminal of Par3 and HAL proteins
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.