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    VCAM1 vascular cell adhesion molecule 1 [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 712036, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VCAM1provided by VGNC
    Official Full Name
    vascular cell adhesion molecule 1provided by VGNC
    Primary source
    VGNC:VGNC:78761
    Locus tag
    EGK_01015
    See related
    Ensembl:ENSMMUG00000022906
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See VCAM1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 1 NC_041754.1 (123419427..123438855, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 1 NC_027893.1 (101583631..101603058)

    Chromosome 1 - NC_041754.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 30 member 7 Neighboring gene exostosin like glycosyltransferase 2 Neighboring gene 60S ribosomal protein L36a-like Neighboring gene G protein-coupled receptor 88

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequencing and comparison of two nonhuman primate animal models, the cynomolgus and Chinese rhesus macaques. Yan G, et al. Nat Biotechnol, 2011 Oct 16. PMID 22002653
    2. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables integrin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell-cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vascular cell adhesion protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041754.1 Reference Mmul_10 Primary Assembly

      Range
      123419427..123438855 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001107924.4 → XP_001107924.1  vascular cell adhesion protein 1

      See identical proteins and their annotated locations for XP_001107924.1

      UniProtKB/TrEMBL
      A0A1D5RJM5, A0A8J8YC78, F6W7X9, G7MI61, H9ZD67
      Related
      ENSMMUP00000030169.4, ENSMMUT00000032245.4
      Conserved Domains (7) summary
      cd07689
      Location:116 → 214
      Ig2_VCAM-1; Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins
      smart00408
      Location:238 → 298
      IGc2; Immunoglobulin C-2 Type
      smart00410
      Location:321 → 399
      IG_like; Immunoglobulin like
      pfam07679
      Location:26 → 112
      I-set; Immunoglobulin I-set domain
      pfam13895
      Location:515 → 596
      Ig_2; Immunoglobulin domain
      pfam13927
      Location:608 → 672
      Ig_3; Immunoglobulin domain
      cl11960
      Location:29 → 98
      Ig; Immunoglobulin domain
    Nucleotide Protein
    Heading Accession and Version

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