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    VPS28 VPS28 subunit of ESCRT-I [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 702412, updated on 17-Aug-2024

    Summary

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    Official Symbol
    VPS28provided by VGNC
    Official Full Name
    VPS28 subunit of ESCRT-Iprovided by VGNC
    Primary source
    VGNC:VGNC:79116
    See related
    Ensembl:ENSMMUG00000020667
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See VPS28 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 8 NC_041761.1 (144736069..144741028, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 8 NC_027900.1 (143696779..143701689, complement)

    Chromosome 8 - NC_041761.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114680370 Neighboring gene solute carrier family 39 member 4 Neighboring gene endogenous retrovirus group K member 7 Env polyprotein-like Neighboring gene tonsoku like, DNA repair protein Neighboring gene cysteine and histidine rich 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-containing complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT I complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    vacuolar protein sorting-associated protein 28 homolog
    Names
    VPS28, ESCRT-I subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001266396.1 → NP_001253325.1  vacuolar protein sorting-associated protein 28 homolog

      See identical proteins and their annotated locations for NP_001253325.1

      Status: PROVISIONAL

      Source sequence(s)
      JV045518
      UniProtKB/TrEMBL
      F6X3L2
      Related
      ENSMMUP00000031843.3, ENSMMUT00000038762.3
      Conserved Domains (1) summary
      pfam03997
      Location:39 → 219
      VPS28; VPS28 protein

    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041761.1 Reference Mmul_10 Primary Assembly

      Range
      144736069..144741028 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015146192.2 → XP_015001678.1  vacuolar protein sorting-associated protein 28 homolog isoform X1

      UniProtKB/TrEMBL
      F6X3L2
      Conserved Domains (1) summary
      pfam03997
      Location:39 → 219
      VPS28; VPS28 protein

    2. XM_028852196.1 → XP_028708029.1  vacuolar protein sorting-associated protein 28 homolog isoform X1

      UniProtKB/TrEMBL
      F6X3L2
      Conserved Domains (1) summary
      pfam03997
      Location:39 → 219
      VPS28; VPS28 protein
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials