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    CLGN calmegin [ Macaca mulatta (Rhesus monkey) ]

    Gene ID: 698361, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CLGNprovided by VGNC
    Official Full Name
    calmeginprovided by VGNC
    Primary source
    VGNC:VGNC:71253
    See related
    Ensembl:ENSMMUG00000022355
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Macaca mulatta
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
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    Genomic context

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    See CLGN in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    103 current Mmul_10 (GCF_003339765.1) 5 NC_041758.1 (138279986..138313165, complement)
    102 previous assembly Mmul_8.0.1 (GCF_000772875.2) 5 NC_027897.1 (140455496..140488570, complement)

    Chromosome 5 - NC_041758.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114678404 Neighboring gene uncharacterized LOC106998510 Neighboring gene 60S ribosomal protein L14-like Neighboring gene short coiled-coil protein Neighboring gene uncharacterized LOC106998511 Neighboring gene MGAT4 family member D Neighboring gene ELMO domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A new rhesus macaque assembly and annotation for next-generation sequencing analyses. Zimin AV, et al. Biol Direct, 2014 Oct 14. PMID 25319552, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables unfolded protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein folding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calmegin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Macaca mulatta Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mmul_10 Primary Assembly

    Genomic

    1. NC_041758.1 Reference Mmul_10 Primary Assembly

      Range
      138279986..138313165 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001089882.4 → XP_001089882.2  calmegin

      UniProtKB/TrEMBL
      A0A1D5RAF5, F6ZBR0, H9EWN7
      Conserved Domains (1) summary
      pfam00262
      Location:62 → 429
      Calreticulin; Calreticulin family

    2. XM_001089765.4 → XP_001089765.2  calmegin

      UniProtKB/TrEMBL
      A0A1D5RAF5, F6ZBR0, H9EWN7
      Related
      ENSMMUP00000029427.3, ENSMMUT00000031449.4
      Conserved Domains (1) summary
      pfam00262
      Location:62 → 429
      Calreticulin; Calreticulin family

    3. XM_015139251.2 → XP_014994737.2  calmegin

      UniProtKB/TrEMBL
      A0A1D5RAF5, F6ZBR0, H9EWN7
      Related
      ENSMMUP00000057296.2, ENSMMUT00000073675.2
      Conserved Domains (1) summary
      pfam00262
      Location:62 → 429
      Calreticulin; Calreticulin family
    Nucleotide Protein
    Heading Accession and Version

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