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    TM9SF3 transmembrane 9 superfamily member 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 612786, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TM9SF3provided by VGNC
    Official Full Name
    transmembrane 9 superfamily member 3provided by VGNC
    Primary source
    VGNC:VGNC:47416
    See related
    Ensembl:ENSCAFG00845027322
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See TM9SF3 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (10174369..10242276, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (10086871..10154701, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (10086095..10153934, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (9889072..9957200, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (9948874..10017008, complement)

    Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene oligodendrocytic myelin paranodal and inner loop protein Neighboring gene tolloid like 2 Neighboring gene uncharacterized LOC111092980 Neighboring gene uncharacterized LOC111092999 Neighboring gene phosphoinositide-3-kinase adaptor protein 1 Neighboring gene ferritin light chain-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein localization to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transmembrane 9 superfamily member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051832.1 Reference ROS_Cfam_1.0

      Range
      10174369..10242276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038440149.1 → XP_038296077.1  transmembrane 9 superfamily member 3

      UniProtKB/TrEMBL
      A0A8C0JXK8, A0A8C0PAC2, A0A8C0Z6H8
      Related
      ENSCAFP00845037764.1, ENSCAFT00845048139.1
      Conserved Domains (1) summary
      pfam02990
      Location:56 → 525
      EMP70; Endomembrane protein 70

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049288.1 Alternate UMICH_Zoey_3.1

      Range
      9889072..9957200 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038514761.1 → XP_038370689.1  transmembrane 9 superfamily member 3

      Conserved Domains (1) summary
      pfam02990
      Location:56 → 525
      EMP70; Endomembrane protein 70

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

      Range
      9948874..10017008 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038642557.1 → XP_038498485.1  transmembrane 9 superfamily member 3

      Conserved Domains (1) summary
      pfam02990
      Location:56 → 525
      EMP70; Endomembrane protein 70

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

      Range
      10086095..10153934 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038578389.1 → XP_038434317.1  transmembrane 9 superfamily member 3

      UniProtKB/TrEMBL
      A0A8C0JXK8, A0A8C0PAC2, A0A8C0Z6H8
      Conserved Domains (1) summary
      pfam02990
      Location:56 → 525
      EMP70; Endomembrane protein 70

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      10086871..10154701 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_844680.6 → XP_849773.1  transmembrane 9 superfamily member 3

      UniProtKB/TrEMBL
      A0A8C0JXK8, A0A8C0PAC2, A0A8C0Z6H8
      Conserved Domains (1) summary
      pfam02990
      Location:56 → 525
      EMP70; Endomembrane protein 70
    Nucleotide Protein
    Heading Accession and Version

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