U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    VPS25 vacuolar protein sorting 25 homolog [ Canis lupus familiaris (dog) ]

    Gene ID: 612774, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    VPS25
    Gene description
    vacuolar protein sorting 25 homolog
    See related
    Ensembl:ENSCAFG00845007769
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See VPS25 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (20960604..20965761, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (19703536..19708691, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (20114439..20119596, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (19745515..19750667, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (20011720..20016876, complement)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 56 Neighboring gene WNK lysine deficient protein kinase 4 Neighboring gene receptor activity modifying protein 2 Neighboring gene enhancer of zeste 1 polycomb repressive complex 2 subunit

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein homodimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural molecule activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of ESCRT II complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    vacuolar protein-sorting-associated protein 25

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      20960604..20965761 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038676405.1 → XP_038532333.1  vacuolar protein-sorting-associated protein 25

      UniProtKB/TrEMBL
      A0A8C0KJC5, A0A8C0LUY1, A0A8I3NID4
      Related
      ENSCAFP00845010614.1, ENSCAFT00845013670.1
      Conserved Domains (1) summary
      pfam05871
      Location:10 → 139
      ESCRT-II; ESCRT-II complex subunit

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      19745515..19750667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038485487.1 → XP_038341415.1  vacuolar protein-sorting-associated protein 25

      Conserved Domains (1) summary
      pfam05871
      Location:10 → 139
      ESCRT-II; ESCRT-II complex subunit

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      20011720..20016876 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038611218.1 → XP_038467146.1  vacuolar protein-sorting-associated protein 25

      Conserved Domains (1) summary
      pfam05871
      Location:10 → 139
      ESCRT-II; ESCRT-II complex subunit

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      20114439..20119596 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038547249.1 → XP_038403177.1  vacuolar protein-sorting-associated protein 25

      UniProtKB/TrEMBL
      A0A8C0KJC5, A0A8C0LUY1, A0A8I3NID4
      Conserved Domains (1) summary
      pfam05871
      Location:10 → 139
      ESCRT-II; ESCRT-II complex subunit

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      19703536..19708691 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_844177.6 → XP_849270.2  vacuolar protein-sorting-associated protein 25

      See identical proteins and their annotated locations for XP_849270.2

      UniProtKB/TrEMBL
      A0A8C0KJC5, A0A8C0LUY1, A0A8I3NID4
      Conserved Domains (1) summary
      pfam05871
      Location:10 → 139
      ESCRT-II; ESCRT-II complex subunit
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.