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    SYP synaptophysin [ Canis lupus familiaris (dog) ]

    Gene ID: 612557, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SYPprovided by VGNC
    Official Full Name
    synaptophysinprovided by VGNC
    Primary source
    VGNC:VGNC:54605
    See related
    Ensembl:ENSCAFG00845031053
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SYP in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (42429161..42441205, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (16666206..16678233, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (42495540..42507567, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (42413127..42425154, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (42400777..42412809, complement)

    Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene WD repeat domain 45 Neighboring gene prickle planar cell polarity protein 3 Neighboring gene calcium voltage-gated channel subunit alpha1 F Neighboring gene coiled-coil domain containing 22 Neighboring gene forkhead box P3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in presynaptic active zone IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synaptic vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    synaptophysin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051843.1 Reference ROS_Cfam_1.0

      Range
      42429161..42441205 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038450003.1 → XP_038305931.1  synaptophysin

      UniProtKB/TrEMBL
      A0A8I3QDP8, A0A8I3SCX3
      Related
      ENSCAFP00845043417.1, ENSCAFT00845055203.1
      Conserved Domains (1) summary
      pfam01284
      Location:22 → 221
      MARVEL; Membrane-associating domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049299.1 Alternate UMICH_Zoey_3.1

      Range
      42413127..42425154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038523461.1 → XP_038379389.1  synaptophysin

      Conserved Domains (1) summary
      pfam01284
      Location:22 → 221
      MARVEL; Membrane-associating domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

      Range
      42400777..42412809 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038651942.1 → XP_038507870.1  synaptophysin

      Conserved Domains (1) summary
      pfam01284
      Location:22 → 221
      MARVEL; Membrane-associating domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

      Range
      42495540..42507567 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038587435.1 → XP_038443363.1  synaptophysin

      UniProtKB/TrEMBL
      A0A8C0L223, A0A8C0SE47, A0A8I3QDP8, A0A8P0SK52
      Conserved Domains (1) summary
      pfam01284
      Location:22 → 221
      MARVEL; Membrane-associating domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      16666206..16678233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038464918.1 → XP_038320846.1  synaptophysin

      UniProtKB/TrEMBL
      A0A8C0L223, A0A8C0SE47, A0A8I3QDP8, A0A8P0SK52
      Conserved Domains (1) summary
      pfam01284
      Location:22 → 221
      MARVEL; Membrane-associating domain
    Nucleotide Protein
    Heading Accession and Version

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