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    LDLRAP1 low density lipoprotein receptor adaptor protein 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 612219, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LDLRAP1provided by VGNC
    Official Full Name
    low density lipoprotein receptor adaptor protein 1provided by VGNC
    Primary source
    VGNC:VGNC:42626
    See related
    Ensembl:ENSCAFG00845013761
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See LDLRAP1 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 2 NC_051806.1 (74901453..74925396, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 2 NC_006584.4 (70914328..70937998, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 2 NC_049223.1 (73735844..73759564, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 2 NC_049262.1 (71724767..71748432, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 2 NC_049743.1 (72731525..72755221, complement)

    Chromosome 2 - NC_051806.1Genomic Context describing neighboring genes Neighboring gene mannosidase alpha class 1C member 1 Neighboring gene uncharacterized LOC102154675 Neighboring gene uncharacterized LOC119870404 Neighboring gene macoilin 1 Neighboring gene Rh blood group CcEe antigens

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in early endosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    low density lipoprotein receptor adapter protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051806.1 Reference ROS_Cfam_1.0

      Range
      74901453..74925396 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038659851.1 → XP_038515779.1  low density lipoprotein receptor adapter protein 1 isoform X2

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    2. XM_038659850.1 → XP_038515778.1  low density lipoprotein receptor adapter protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LA80, A0A8I3NS16, A0A8P0SSF6
      Related
      ENSCAFP00845019307.1, ENSCAFT00845024548.1
      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    3. XM_038659852.1 → XP_038515780.1  low density lipoprotein receptor adapter protein 1 isoform X3

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049262.1 Alternate UMICH_Zoey_3.1

      Range
      71724767..71748432 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038470680.1 → XP_038326608.1  low density lipoprotein receptor adapter protein 1 isoform X2

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    2. XM_038470679.1 → XP_038326607.1  low density lipoprotein receptor adapter protein 1 isoform X1

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    3. XM_038470681.1 → XP_038326609.1  low density lipoprotein receptor adapter protein 1 isoform X3

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049743.1 Alternate UNSW_CanFamBas_1.0

      Range
      72731525..72755221 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038595770.1 → XP_038451698.1  low density lipoprotein receptor adapter protein 1 isoform X2

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    2. XM_038595769.1 → XP_038451697.1  low density lipoprotein receptor adapter protein 1 isoform X1

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    3. XM_038595771.1 → XP_038451699.1  low density lipoprotein receptor adapter protein 1 isoform X3

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049223.1 Alternate UU_Cfam_GSD_1.0

      Range
      73735844..73759564 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038531547.1 → XP_038387475.1  low density lipoprotein receptor adapter protein 1 isoform X2

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    2. XM_038531546.1 → XP_038387474.1  low density lipoprotein receptor adapter protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LA80, A0A8I3NS16, A0A8P0SSF6
      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    3. XM_038531548.1 → XP_038387476.1  low density lipoprotein receptor adapter protein 1 isoform X3

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006584.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      70914328..70937998 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005617783.4 → XP_005617840.1  low density lipoprotein receptor adapter protein 1 isoform X2

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    2. XM_849956.5 → XP_855049.1  low density lipoprotein receptor adapter protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LA80, A0A8I3NS16, A0A8P0SSF6
      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold

    3. XM_014110496.3 → XP_013965971.1  low density lipoprotein receptor adapter protein 1 isoform X3

      Conserved Domains (1) summary
      cd13159
      Location:44 → 166
      PTB_LDLRAP-mammal-like; Low Density Lipoprotein Receptor Adaptor Protein 1 (LDLRAP1) in mammals and similar proteins Phosphotyrosine-binding (PTB) PH-like fold
    Nucleotide Protein
    Heading Accession and Version

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