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    PGLYRP1 peptidoglycan recognition protein 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 612209, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PGLYRP1provided by VGNC
    Official Full Name
    peptidoglycan recognition protein 1provided by VGNC
    Primary source
    VGNC:VGNC:44461
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See PGLYRP1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (110145349..110149427)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (109097721..109101584)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (110324620..110328483)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (109821146..109825013)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (109455876..109459739)

    Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene insulin growth factor-like family member 3 Neighboring gene coiled-coil domain containing 61 Neighboring gene microRNA mir-769 Neighboring gene NOVA alternative splicing regulator 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The peptidoglycan recognition proteins (PGRPs). Dziarski R, et al. Genome Biol, 2006. PMID 16930467, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N-acetylmuramoyl-L-alanine amidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidoglycan binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peptidoglycan immune receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to Gram-positive bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in detection of bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in innate immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidoglycan catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidoglycan recognition protein 1; LOW QUALITY PROTEIN: peptidoglycan recognition protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051805.1 Reference ROS_Cfam_1.0

      Range
      110145349..110149427
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038656603.1 → XP_038512531.1  peptidoglycan recognition protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JJR2, A0A8C0QPY5, A0A8P0NPF2
      Conserved Domains (1) summary
      smart00701
      Location:32 → 174
      PGRP; Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049261.1 Alternate UMICH_Zoey_3.1

      Range
      109821146..109825013
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038467801.1 → XP_038323729.1  LOW QUALITY PROTEIN: peptidoglycan recognition protein 1 isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

      Range
      109455876..109459739
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038592802.1 → XP_038448730.1  peptidoglycan recognition protein 1 isoform X1

      Conserved Domains (1) summary
      smart00701
      Location:32 → 174
      PGRP; Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

      Range
      110324620..110328483
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038528523.1 → XP_038384451.1  peptidoglycan recognition protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JJR2, A0A8C0QPY5, A0A8P0NPF2
      Conserved Domains (1) summary
      smart00701
      Location:32 → 174
      PGRP; Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      109097721..109101584
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_849945.5 → XP_855038.1  peptidoglycan recognition protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JJR2, A0A8C0QPY5, A0A8P0NPF2
      Conserved Domains (1) summary
      smart00701
      Location:32 → 174
      PGRP; Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme
    Nucleotide Protein
    Heading Accession and Version

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