U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    NOLC1 nucleolar and coiled-body phosphoprotein 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 609496, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    NOLC1provided by VGNC
    Official Full Name
    nucleolar and coiled-body phosphoprotein 1provided by VGNC
    Primary source
    VGNC:VGNC:43885
    See related
    Ensembl:ENSCAFG00845023156
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See NOLC1 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (15159052..15172143)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (14858076..14871155)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (14876281..14889618)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (14704328..14717681)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (14743673..14756755)

    Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene LIM domain binding 1 Neighboring gene PPARG related coactivator 1 Neighboring gene vacuolar-sorting protein SNF8-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    nucleolar and coiled-body phosphoprotein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051832.1 Reference ROS_Cfam_1.0

      Range
      15159052..15172143
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038440378.1 → XP_038296306.1  nucleolar and coiled-body phosphoprotein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Conserved Domains (2) summary
      PRK12323
      Location:211 → 412
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam05022
      Location:633 → 705
      SRP40_C; SRP40, C-terminal domain

    2. XM_038440376.1 → XP_038296304.1  nucleolar and coiled-body phosphoprotein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Conserved Domains (2) summary
      PRK12323
      Location:212 → 413
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam05022
      Location:634 → 706
      SRP40_C; SRP40, C-terminal domain

    3. XM_038440377.1 → XP_038296305.1  nucleolar and coiled-body phosphoprotein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Conserved Domains (2) summary
      PRK12323
      Location:211 → 412
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam05022
      Location:633 → 705
      SRP40_C; SRP40, C-terminal domain

    4. XM_038440379.1 → XP_038296307.1  nucleolar and coiled-body phosphoprotein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Conserved Domains (1) summary
      pfam05022
      Location:630 → 702
      SRP40_C; SRP40, C-terminal domain

    5. XM_038440380.1 → XP_038296308.1  nucleolar and coiled-body phosphoprotein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Related
      ENSCAFP00845032017.1, ENSCAFT00845040885.1
      Conserved Domains (1) summary
      pfam05022
      Location:629 → 701
      SRP40_C; SRP40, C-terminal domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049288.1 Alternate UMICH_Zoey_3.1

      Range
      14704328..14717681
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038515001.1 → XP_038370929.1  nucleolar and coiled-body phosphoprotein 1 isoform X3

    2. XM_038514999.1 → XP_038370927.1  nucleolar and coiled-body phosphoprotein 1 isoform X1

    3. XM_038515000.1 → XP_038370928.1  nucleolar and coiled-body phosphoprotein 1 isoform X2

    4. XM_038515002.1 → XP_038370930.1  nucleolar and coiled-body phosphoprotein 1 isoform X4

    5. XM_038515003.1 → XP_038370931.1  nucleolar and coiled-body phosphoprotein 1 isoform X5

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

      Range
      14743673..14756755
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038642794.1 → XP_038498722.1  nucleolar and coiled-body phosphoprotein 1 isoform X3

      Conserved Domains (2) summary
      PRK12323
      Location:211 → 412
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam05022
      Location:633 → 705
      SRP40_C; SRP40, C-terminal domain

    2. XM_038642792.1 → XP_038498720.1  nucleolar and coiled-body phosphoprotein 1 isoform X1

      Conserved Domains (2) summary
      PRK12323
      Location:212 → 413
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam05022
      Location:634 → 706
      SRP40_C; SRP40, C-terminal domain

    3. XM_038642793.1 → XP_038498721.1  nucleolar and coiled-body phosphoprotein 1 isoform X2

      Conserved Domains (2) summary
      PRK12323
      Location:211 → 412
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam05022
      Location:633 → 705
      SRP40_C; SRP40, C-terminal domain

    4. XM_038642795.1 → XP_038498723.1  nucleolar and coiled-body phosphoprotein 1 isoform X4

      Conserved Domains (1) summary
      pfam05022
      Location:630 → 702
      SRP40_C; SRP40, C-terminal domain

    5. XM_038642796.1 → XP_038498724.1  nucleolar and coiled-body phosphoprotein 1 isoform X5

      Conserved Domains (1) summary
      pfam05022
      Location:629 → 701
      SRP40_C; SRP40, C-terminal domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

      Range
      14876281..14889618
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038578603.1 → XP_038434531.1  nucleolar and coiled-body phosphoprotein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0QYC6

    2. XM_038578601.1 → XP_038434529.1  nucleolar and coiled-body phosphoprotein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QYC6

    3. XM_038578602.1 → XP_038434530.1  nucleolar and coiled-body phosphoprotein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0QYC6

    4. XM_038578604.1 → XP_038434532.1  nucleolar and coiled-body phosphoprotein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0QYC6

    5. XM_038578606.1 → XP_038434534.1  nucleolar and coiled-body phosphoprotein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8C0QYC6

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      14858076..14871155
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038460392.1 → XP_038316320.1  nucleolar and coiled-body phosphoprotein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Conserved Domains (2) summary
      PRK12323
      Location:211 → 412
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam05022
      Location:633 → 705
      SRP40_C; SRP40, C-terminal domain

    2. XM_005637650.4 → XP_005637707.1  nucleolar and coiled-body phosphoprotein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Conserved Domains (2) summary
      PRK12323
      Location:212 → 413
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam05022
      Location:634 → 706
      SRP40_C; SRP40, C-terminal domain

    3. XM_005637651.4 → XP_005637708.1  nucleolar and coiled-body phosphoprotein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Conserved Domains (2) summary
      PRK12323
      Location:211 → 412
      PRK12323; DNA polymerase III subunit gamma/tau
      pfam05022
      Location:633 → 705
      SRP40_C; SRP40, C-terminal domain

    4. XM_005637653.4 → XP_005637710.1  nucleolar and coiled-body phosphoprotein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Conserved Domains (1) summary
      pfam05022
      Location:630 → 702
      SRP40_C; SRP40, C-terminal domain

    5. XM_014109080.3 → XP_013964555.1  nucleolar and coiled-body phosphoprotein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8C0QYC6
      Conserved Domains (1) summary
      pfam05022
      Location:629 → 701
      SRP40_C; SRP40, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials