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    RIF1 replication timing regulatory factor 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 609234, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RIF1provided by VGNC
    Official Full Name
    replication timing regulatory factor 1provided by VGNC
    Primary source
    VGNC:VGNC:45575
    See related
    Ensembl:ENSCAFG00845008561
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See RIF1 in Genome Data Viewer
    Location:
    chromosome: 19
    Exon count:
    36
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 19 NC_051823.1 (54171299..54224157)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 19 NC_006601.4 (52823853..52876461)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 19 NC_049240.1 (54422620..54475318)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 19 NC_049279.1 (52884821..52937353)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 19 NC_049760.1 (52956937..53009549)

    Chromosome 19 - NC_051823.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119864411 Neighboring gene uncharacterized LOC102153053 Neighboring gene TNF alpha induced protein 6 Neighboring gene uncharacterized LOC102153280 Neighboring gene nebulin Neighboring gene uncharacterized LOC119864501 Neighboring gene ADP ribosylation factor like GTPase 5A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in telomere maintenance IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    telomere-associated protein RIF1
    Names
    RAP1 interacting factor homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051823.1 Reference ROS_Cfam_1.0

      Range
      54171299..54224157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038426284.1 → XP_038282212.1  telomere-associated protein RIF1 isoform X5

      UniProtKB/TrEMBL
      A0A8I3NLN9
      Conserved Domains (3) summary
      PTZ00121
      Location:1493 → 2123
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2310 → 2357
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
      pfam12231
      Location:29 → 361
      Rif1_N; Rap1-interacting factor 1 N terminal

    2. XM_038426283.1 → XP_038282211.1  telomere-associated protein RIF1 isoform X4

      UniProtKB/TrEMBL
      A0A8I3NLN9
      Related
      ENSCAFP00845011848.1, ENSCAFT00845015255.1
      Conserved Domains (3) summary
      PTZ00121
      Location:1493 → 2123
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2284 → 2331
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
      pfam12231
      Location:29 → 361
      Rif1_N; Rap1-interacting factor 1 N terminal

    3. XM_038426279.1 → XP_038282207.1  telomere-associated protein RIF1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3NLN9
      Related
      ENSCAFP00845011692.1, ENSCAFT00845015067.1
      Conserved Domains (3) summary
      PTZ00121
      Location:1493 → 2123
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2310 → 2357
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
      pfam12231
      Location:29 → 361
      Rif1_N; Rap1-interacting factor 1 N terminal

    4. XM_038426280.1 → XP_038282208.1  telomere-associated protein RIF1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3NLN9
      Conserved Domains (3) summary
      PTZ00121
      Location:1485 → 2115
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2302 → 2349
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
      pfam12231
      Location:29 → 361
      Rif1_N; Rap1-interacting factor 1 N terminal

    5. XM_038426282.1 → XP_038282210.1  telomere-associated protein RIF1 isoform X3

      UniProtKB/TrEMBL
      A0A8I3NLN9
      Related
      ENSCAFP00845012210.1, ENSCAFT00845015699.1
      Conserved Domains (3) summary
      PTZ00121
      Location:1479 → 2109
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2296 → 2343
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
      pfam12231
      Location:29 → 347
      Rif1_N; Rap1-interacting factor 1 N terminal

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049279.1 Alternate UMICH_Zoey_3.1

      Range
      52884821..52937353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038502455.1 → XP_038358383.1  telomere-associated protein RIF1 isoform X4

    2. XM_038502452.1 → XP_038358380.1  telomere-associated protein RIF1 isoform X1

    3. XM_038502453.1 → XP_038358381.1  telomere-associated protein RIF1 isoform X2

    4. XM_038502454.1 → XP_038358382.1  telomere-associated protein RIF1 isoform X3

    RNA

    1. XR_005340574.1 RNA Sequence

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049760.1 Alternate UNSW_CanFamBas_1.0

      Range
      52956937..53009549
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038629300.1 → XP_038485228.1  telomere-associated protein RIF1 isoform X5

      Conserved Domains (3) summary
      PTZ00121
      Location:1493 → 2123
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2310 → 2357
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
      pfam12231
      Location:29 → 361
      Rif1_N; Rap1-interacting factor 1 N terminal

    2. XM_038629299.1 → XP_038485227.1  telomere-associated protein RIF1 isoform X4

    3. XM_038629296.1 → XP_038485224.1  telomere-associated protein RIF1 isoform X1

    4. XM_038629297.1 → XP_038485225.1  telomere-associated protein RIF1 isoform X2

    5. XM_038629298.1 → XP_038485226.1  telomere-associated protein RIF1 isoform X3

      Conserved Domains (3) summary
      PTZ00121
      Location:1479 → 2109
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2296 → 2343
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
      pfam12231
      Location:29 → 347
      Rif1_N; Rap1-interacting factor 1 N terminal

    RNA

    1. XR_005408347.1 RNA Sequence

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049240.1 Alternate UU_Cfam_GSD_1.0

      Range
      54422620..54475318
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038565197.1 → XP_038421125.1  telomere-associated protein RIF1 isoform X5

      UniProtKB/TrEMBL
      A0A8I3NLN9

    2. XM_038565196.1 → XP_038421124.1  telomere-associated protein RIF1 isoform X4

      UniProtKB/TrEMBL
      A0A8I3NLN9

    3. XM_038565193.1 → XP_038421121.1  telomere-associated protein RIF1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3NLN9

    4. XM_038565194.1 → XP_038421122.1  telomere-associated protein RIF1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3NLN9

    5. XM_038565195.1 → XP_038421123.1  telomere-associated protein RIF1 isoform X3

      UniProtKB/TrEMBL
      A0A8I3NLN9

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006601.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      52823853..52876461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038454820.1 → XP_038310748.1  telomere-associated protein RIF1 isoform X5

      UniProtKB/TrEMBL
      A0A8C0KXP4
      Conserved Domains (3) summary
      PTZ00121
      Location:1493 → 2123
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2310 → 2357
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
      pfam12231
      Location:29 → 361
      Rif1_N; Rap1-interacting factor 1 N terminal

    2. XM_003639706.5 → XP_003639754.1  telomere-associated protein RIF1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0KXP4
      Conserved Domains (2) summary
      pfam12231
      Location:19 → 361
      Rif1_N; Rap1-interacting factor 1 N terminal
      cl26511
      Location:1493 → 2123
      Neuromodulin_N; Gap junction protein N-terminal region

    3. XM_003639707.5 → XP_003639755.1  telomere-associated protein RIF1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0KXP4
      Conserved Domains (2) summary
      pfam12231
      Location:19 → 361
      Rif1_N; Rap1-interacting factor 1 N terminal
      cl26511
      Location:1493 → 2123
      Neuromodulin_N; Gap junction protein N-terminal region

    4. XM_022406185.2 → XP_022261893.1  telomere-associated protein RIF1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0KXP4
      Conserved Domains (2) summary
      pfam12231
      Location:19 → 361
      Rif1_N; Rap1-interacting factor 1 N terminal
      cl26511
      Location:1485 → 2115
      Neuromodulin_N; Gap junction protein N-terminal region

    5. XM_038454819.1 → XP_038310747.1  telomere-associated protein RIF1 isoform X3

      UniProtKB/TrEMBL
      A0A8P0T5U9
      Conserved Domains (3) summary
      PTZ00121
      Location:1479 → 2109
      PTZ00121; MAEBL; Provisional
      cd14267
      Location:2296 → 2343
      Rif1_CTD_C-II_like; Saccharomyces cerevisiae Rap1-interacting factor 1 CTD domain, metazoan Rif1 C-II domains and related domains
      pfam12231
      Location:29 → 347
      Rif1_N; Rap1-interacting factor 1 N terminal
    Nucleotide Protein
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