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    CAPN9 calpain 9 [ Canis lupus familiaris (dog) ]

    Gene ID: 608044, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CAPN9provided by VGNC
    Official Full Name
    calpain 9provided by VGNC
    Primary source
    VGNC:VGNC:38708
    See related
    Ensembl:ENSCAFG00845000946
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CAPN9 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 4 NC_051808.1 (8637647..8677873, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 4 NC_006586.4 (8604905..8645249, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 4 NC_049225.1 (8993883..9034136, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 4 NC_049264.1 (8641831..8682029, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 4 NC_049745.1 (8763717..8803940, complement)

    Chromosome 4 - NC_051808.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 13 Neighboring gene chromosome 4 C1orf198 homolog Neighboring gene uncharacterized LOC119871445 Neighboring gene angiotensinogen Neighboring gene microRNA mir-1841 Neighboring gene component of oligomeric golgi complex 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain-9; LOW QUALITY PROTEIN: calpain-9
    XP_038328841.1
    XP_038389863.1
    XP_038454183.1
    XP_038518488.1
    XP_850025.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051808.1 Reference ROS_Cfam_1.0

      Range
      8637647..8677873 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038662560.1 → XP_038518488.1  calpain-9

      UniProtKB/TrEMBL
      A0A8C0NDL3, A0A8C0PZ26, A0A8I3MDF9
      Related
      ENSCAFP00845001334.1, ENSCAFT00845001689.1
      Conserved Domains (4) summary
      cd00214
      Location:347 → 496
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
      cd15897
      Location:522 → 550
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:522 → 692
      EFh_PEF; The penta-EF hand (PEF) family
      pfam00648
      Location:43 → 335
      Peptidase_C2; Calpain family cysteine protease

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049264.1 Alternate UMICH_Zoey_3.1

      Range
      8641831..8682029 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038472913.1 → XP_038328841.1  LOW QUALITY PROTEIN: calpain-9

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049745.1 Alternate UNSW_CanFamBas_1.0

      Range
      8763717..8803940 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038598255.1 → XP_038454183.1  calpain-9

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049225.1 Alternate UU_Cfam_GSD_1.0

      Range
      8993883..9034136 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038533935.1 → XP_038389863.1  calpain-9

      UniProtKB/TrEMBL
      A0A8C0NDL3, A0A8C0PZ26, A0A8I3MDF9
      Conserved Domains (4) summary
      cd00214
      Location:347 → 496
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
      cd15897
      Location:522 → 550
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:522 → 692
      EFh_PEF; The penta-EF hand (PEF) family
      pfam00648
      Location:43 → 335
      Peptidase_C2; Calpain family cysteine protease

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006586.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      8604905..8645249 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_844932.6 → XP_850025.2  calpain-9

      UniProtKB/TrEMBL
      A0A8C0NDL3, A0A8C0PZ26, A0A8I3MDF9
      Conserved Domains (4) summary
      cd00214
      Location:347 → 496
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...
      cd15897
      Location:522 → 550
      EFh_PEF; EF-hand motif [structural motif]
      cl25352
      Location:522 → 692
      EFh_PEF; The penta-EF hand (PEF) family
      pfam00648
      Location:43 → 335
      Peptidase_C2; Calpain family cysteine protease
    Nucleotide Protein
    Heading Accession and Version

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