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    tagln transgelin [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 594967, updated on 4-Nov-2024

    Summary

    Official Symbol
    taglnprovided by Xenbase
    Official Full Name
    transgelinprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-489085
    See related
    Ensembl:ENSXETG00000003757 AllianceGenome:Xenbase:XB-GENE-489085
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    sm22; smcc; tagln1; ws3-10
    Summary
    Predicted to be located in cytoplasm. Orthologous to human TAGLN (transgelin). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
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    Genomic context

    See tagln in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (82013775..82019980, complement)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (84189523..84195728)

    Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene beta-site APP-cleaving enzyme 1 Neighboring gene ring finger protein 214 Neighboring gene proprotein convertase subtilisin/kexin type 7 Neighboring gene SID1 transmembrane family member 2 Neighboring gene platelet activating factor acetylhydrolase 1b catalytic subunit 2 Neighboring gene SIK family kinase 3

    Genomic regions, transcripts, and products

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001030408.1NP_001025579.1  transgelin

      See identical proteins and their annotated locations for NP_001025579.1

      Status: PROVISIONAL

      Source sequence(s)
      BC091023
      UniProtKB/TrEMBL
      F7AB06, Q5BKM2
      Related
      ENSXETP00000008136.3, ENSXETT00000008136.5
      Conserved Domains (1) summary
      COG5199
      Location:14189
      SCP1; Calponin [Cytoskeleton]

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      82013775..82019980 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)