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    ankrd34bb ankyrin repeat domain 34Bb [ Danio rerio (zebrafish) ]

    Gene ID: 565548, updated on 2-Nov-2024

    Summary

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    Official Symbol
    ankrd34bbprovided by ZNC
    Official Full Name
    ankyrin repeat domain 34Bbprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-060526-101
    See related
    Ensembl:ENSDARG00000061641 AllianceGenome:ZFIN:ZDB-GENE-060526-101
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:ch211-214j8.10
    Summary
    Orthologous to human ANKRD34B (ankyrin repeat domain 34B). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    human mouse all
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    Genomic context

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    See ankrd34bb in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (26148455..26160583)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (25548651..25560442)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene si:ch211-214j8.12 Neighboring gene dihydrofolate reductase Neighboring gene family with sequence similarity 151 member B Neighboring gene coiled-coil domain containing 125

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ankyrin repeat domain 34Bb

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098183.1 → NP_001091653.1  ankyrin repeat domain 34Bb

      See identical proteins and their annotated locations for NP_001091653.1

      Status: PROVISIONAL

      Source sequence(s)
      BX510923
      UniProtKB/TrEMBL
      A0A8M2BJQ9, A2BGQ0
      Related
      ENSDARP00000082574.4, ENSDART00000088141.5
      Conserved Domains (3) summary
      cd00204
      Location:37 → 140
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13637
      Location:45 → 105
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:42 → 81
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      26148455..26160583
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005171895.5 → XP_005171952.1  ankyrin repeat domain 34Bb isoform X1

      See identical proteins and their annotated locations for XP_005171952.1

      UniProtKB/TrEMBL
      A0A8M2BJQ9, A2BGQ0
      Conserved Domains (3) summary
      cd00204
      Location:37 → 140
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam13637
      Location:45 → 105
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:42 → 81
      ANK; ANK repeat [structural motif]

    2. XM_068221263.1 → XP_068077364.1  ankyrin repeat domain 34Bb isoform X2

    Nucleotide Protein
    Heading Accession and Version

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