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    tp53i11b tumor protein p53 inducible protein 11b [ Danio rerio (zebrafish) ]

    Gene ID: 556618, updated on 2-Nov-2024

    Summary

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    Official Symbol
    tp53i11bprovided by ZNC
    Official Full Name
    tumor protein p53 inducible protein 11bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-6328
    See related
    Ensembl:ENSDARG00000006025 AllianceGenome:ZFIN:ZDB-GENE-030131-6328
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fi47b03; tp53i11; wu:fi47b03; zgc:153054; si:ch211-122k23.2
    Summary
    Predicted to be located in membrane. Orthologous to human TP53I11 (tumor protein p53 inducible protein 11). [provided by Alliance of Genome Resources, Nov 2024]
    Orthologs
    all
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    Genomic context

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    See tp53i11b in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (27439843..27569310)
    105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (27457709..27588403)

    Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene si:dkey-29p10.4 Neighboring gene uncharacterized LOC137488288 Neighboring gene CD82 molecule b Neighboring gene tetraspanin 18b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Nucleoporin 62-Like Protein is Required for the Development of Pharyngeal Arches through Regulation of Wnt/β-Catenin Signaling and Apoptotic Homeostasis in Zebrafish. Yang X, et al. Cells, 2019 Sep 5. PMID 31492028, Free PMC Article
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tumor protein p53-inducible protein 11b
    Names
    p53 inducible protein
    tumor protein p53 inducible protein 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001077249.1 → NP_001070717.1  tumor protein p53-inducible protein 11b

      See identical proteins and their annotated locations for NP_001070717.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124630
      UniProtKB/TrEMBL
      Q08BP4
      Related
      ENSDARP00000005915.8, ENSDART00000014726.11
      Conserved Domains (1) summary
      pfam14936
      Location:10 → 188
      p53-inducible11; Tumour protein p53-inducible protein 11

    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007129.7 Reference GRCz11 Primary Assembly

      Range
      27439843..27569310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021467658.2 → XP_021323333.1  tumor protein p53-inducible protein 11b isoform X1

      UniProtKB/TrEMBL
      A0A8M9PA32
      Related
      ENSDARP00000147044.1, ENSDART00000182018.1
      Conserved Domains (1) summary
      pfam14936
      Location:10 → 188
      p53-inducible11; tumor protein p53-inducible protein 11
    Nucleotide Protein
    Heading Accession and Version

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