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    PLAGL1 PLAG1 like zinc finger 1 [ Bos taurus (domestic cattle) ]

    Gene ID: 539761, updated on 4-Oct-2024

    Summary

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    Official Symbol
    PLAGL1provided by VGNC
    Official Full Name
    PLAG1 like zinc finger 1provided by VGNC
    Primary source
    VGNC:VGNC:32972
    See related
    BGD:BT29836; Ensembl:ENSBTAG00000026523
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    ZAC1
    Orthologs
    human mouse all
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    Genomic context

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    See PLAGL1 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 9 NC_037336.1 (81363243..81419573, complement)

    Chromosome 9 - NC_037336.1Genomic Context describing neighboring genes Neighboring gene phosphatase and actin regulator 2 Neighboring gene transfer RNA serine (anticodon GGA) Neighboring gene zinc finger C2HC-type containing 1B Neighboring gene LTV1 ribosome biogenesis factor Neighboring gene splicing factor 3b subunit 5 Neighboring gene syntaxin 11

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037336.1 Chromosome 9 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC160033

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein PLAGL1
    Names
    pleiomorphic adenoma gene-like 1
    zinc finger protein Zac 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103289.1 → NP_001096759.1  zinc finger protein PLAGL1

      See identical proteins and their annotated locations for NP_001096759.1

      Status: PROVISIONAL

      Source sequence(s)
      BC149832
      UniProtKB/TrEMBL
      A6QQH3
      Related
      ENSBTAP00000090395.1, ENSBTAT00000089857.1
      Conserved Domains (2) summary
      sd00017
      Location:70 → 90
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10 → 32
      zf-C2H2; Zinc finger, C2H2 type

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037336.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      81363243..81419573 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015472892.3 → XP_015328378.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29 → 109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80 → 207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:6 → 26
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_005211012.5 → XP_005211069.1  zinc finger protein PLAGL1 isoform X2

      See identical proteins and their annotated locations for XP_005211069.1

      UniProtKB/TrEMBL
      A0A3Q1NL53, F6R951
      Related
      ENSBTAP00000073113.2, ENSBTAT00000071595.2
      Conserved Domains (3) summary
      COG5236
      Location:28 → 155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:70 → 90
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10 → 32
      zf-C2H2; Zinc finger, C2H2 type

    3. XM_010808656.4 → XP_010806958.1  zinc finger protein PLAGL1 isoform X1

      See identical proteins and their annotated locations for XP_010806958.1

      Conserved Domains (3) summary
      COG5189
      Location:29 → 109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80 → 207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:6 → 26
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_005211009.5 → XP_005211066.1  zinc finger protein PLAGL1 isoform X2

      See identical proteins and their annotated locations for XP_005211066.1

      UniProtKB/TrEMBL
      A0A3Q1NL53, F6R951
      Conserved Domains (3) summary
      COG5236
      Location:28 → 155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:70 → 90
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10 → 32
      zf-C2H2; Zinc finger, C2H2 type

    5. XM_015472893.3 → XP_015328379.1  zinc finger protein PLAGL1 isoform X2

      UniProtKB/TrEMBL
      A0A3Q1NL53, F6R951
      Related
      ENSBTAP00000037548.4, ENSBTAT00000037724.6
      Conserved Domains (3) summary
      COG5236
      Location:28 → 155
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:70 → 90
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:10 → 32
      zf-C2H2; Zinc finger, C2H2 type

    6. XM_010808652.4 → XP_010806954.1  zinc finger protein PLAGL1 isoform X1

      See identical proteins and their annotated locations for XP_010806954.1

      Conserved Domains (3) summary
      COG5189
      Location:29 → 109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80 → 207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:6 → 26
      ZF_C2H2; C2H2 Zn finger [structural motif]

    7. XM_024996785.2 → XP_024852553.1  zinc finger protein PLAGL1 isoform X1

      Conserved Domains (3) summary
      COG5189
      Location:29 → 109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80 → 207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:6 → 26
      ZF_C2H2; C2H2 Zn finger [structural motif]

    8. XM_059889799.1 → XP_059745782.1  zinc finger protein PLAGL1 isoform X1

    9. XM_059889798.1 → XP_059745781.1  zinc finger protein PLAGL1 isoform X1

    10. XM_010808654.4 → XP_010806956.1  zinc finger protein PLAGL1 isoform X1

      See identical proteins and their annotated locations for XP_010806956.1

      Conserved Domains (3) summary
      COG5189
      Location:29 → 109
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      COG5236
      Location:80 → 207
      COG5236; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
      sd00017
      Location:6 → 26
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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