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    KLF9 KLF transcription factor 9 [ Bos taurus (domestic cattle) ]

    Gene ID: 539139, updated on 4-Oct-2024

    Summary

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    Official Symbol
    KLF9provided by VGNC
    Official Full Name
    KLF transcription factor 9provided by VGNC
    Primary source
    VGNC:VGNC:30632
    See related
    BGD:BT19203; Ensembl:ENSBTAG00000016229
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See KLF9 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 8 NC_037335.1 (46512457..46611498, complement)

    Chromosome 8 - NC_037335.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 95 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene MAM domain containing 2 Neighboring gene structural maintenance of chromosomes 5 Neighboring gene large ribosomal subunit protein eL36-like Neighboring gene microRNA mir-2285i Neighboring gene uncharacterized LOC132345957

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037335.1 Chromosome 8 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Krueppel-like factor 9
    Names
    Kruppel like factor 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001193214.1 → NP_001180143.1  Krueppel-like factor 9

      See identical proteins and their annotated locations for NP_001180143.1

      Status: PROVISIONAL

      Source sequence(s)
      NKLS02000008
      UniProtKB/TrEMBL
      E1B7V1
      Related
      ENSBTAP00000021593.3, ENSBTAT00000021593.5
      Conserved Domains (3) summary
      COG5048
      Location:94 → 234
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:145 → 167
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cd21578
      Location:3 → 144
      KLF9_N; N-terminal domain of Kruppel-like factor 9

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037335.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      46512457..46611498 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059889181.1 → XP_059745164.1  Krueppel-like factor 9 isoform X1

      UniProtKB/TrEMBL
      E1B7V1

    2. XM_059889180.1 → XP_059745163.1  Krueppel-like factor 9 isoform X1

      UniProtKB/TrEMBL
      E1B7V1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Research Materials