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    PCF11 PCF11 cleavage and polyadenylation factor subunit [ Bos taurus (domestic cattle) ]

    Gene ID: 510604, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PCF11provided by VGNC
    Official Full Name
    PCF11 cleavage and polyadenylation factor subunitprovided by VGNC
    Primary source
    VGNC:VGNC:32625
    See related
    Ensembl:ENSBTAG00000015277
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    See PCF11 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 29 NC_037356.1 (12480392..12505320, complement)

    Chromosome 29 - NC_037356.1Genomic Context describing neighboring genes Neighboring gene discs large MAGUK scaffold protein 2 Neighboring gene uncharacterized LOC132344244 Neighboring gene uncharacterized LOC132344245 Neighboring gene uncharacterized LOC132344246 Neighboring gene coiled-coil domain containing 90B Neighboring gene ankyrin repeat domain 42

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037356.1 Chromosome 29 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA polymerase II complex binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in termination of RNA polymerase II transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of mRNA cleavage factor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA cleavage complex 2 protein Pcf11
    Names
    PCF11, cleavage and polyadenylation factor subunit, homolog
    pre-mRNA cleavage complex 2 protein Pcf11-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037356.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      12480392..12505320 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024987550.2 → XP_024843318.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X2

      UniProtKB/TrEMBL
      F1MU45
      Related
      ENSBTAP00000020320.7, ENSBTAT00000020320.7
      Conserved Domains (2) summary
      cd03562
      Location:19 → 130
      CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
      pfam09606
      Location:857 → 1198
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal

    2. XM_024987549.2 → XP_024843317.1  pre-mRNA cleavage complex 2 protein Pcf11 isoform X1

      Conserved Domains (2) summary
      cd03562
      Location:19 → 130
      CID; CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA ...
      pfam09606
      Location:988 → 1329
      Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    Nucleotide Protein Strain
    Heading Accession and Version

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