U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CD1B CD1b molecule [ Bos taurus (domestic cattle) ]

    Gene ID: 509004, updated on 10-Oct-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    CD1B
    Gene description
    CD1b molecule
    See related
    BGD:BT23204; Ensembl:ENSBTAG00000038426
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    CD1B3
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CD1B in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 3 NC_037330.1 (11713130..11717788, complement)

    Chromosome 3 - NC_037330.1Genomic Context describing neighboring genes Neighboring gene T-cell surface glycoprotein CD1b-1-like Neighboring gene T-cell surface glycoprotein CD1b-2-like Neighboring gene T-cell surface glycoprotein CD1b-2-like Neighboring gene T-cell surface glycoprotein CD1b-2-like

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_037330.1 Chromosome 3 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Crystal structure of bovine CD1b3 with endogenously bound ligands. Girardi E, et al. J Immunol, 2010 Jul 1. PMID 20519644, Free PMC Article
    2. The bovine CD1 family contains group 1 CD1 proteins, but no functional CD1d. Van Rhijn I, et al. J Immunol, 2006 Apr 15. PMID 16585584
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables endogenous lipid antigen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables exogenous lipid antigen binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables lipopeptide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in immune response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of T cell mediated cytotoxicity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in external side of plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    CD1b molecule
    Names
    CD1b3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001046021.1 → NP_001039486.1  CD1b molecule precursor

      See identical proteins and their annotated locations for NP_001039486.1

      Status: PROVISIONAL

      Source sequence(s)
      DQ192542
      UniProtKB/TrEMBL
      G3X6T5, Q1L1H6
      Related
      ENSBTAP00000013155.4, ENSBTAT00000013155.5
      Conserved Domains (2) summary
      cd07698
      Location:203 → 295
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      cl08246
      Location:19 → 198
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037330.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      11713130..11717788 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059883098.1 → XP_059739081.1  CD1b molecule isoform X1

      UniProtKB/TrEMBL
      A0A3Q1MC44
      Related
      ENSBTAP00000066316.2, ENSBTAT00000066422.2

    2. XM_024987008.2 → XP_024842776.1  CD1b molecule isoform X2

      UniProtKB/TrEMBL
      G3X6T5
      Conserved Domains (2) summary
      cd07698
      Location:159 → 251
      IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain
      cl08246
      Location:19 → 154
      MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.