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    GPC4 glypican 4 [ Canis lupus familiaris (dog) ]

    Gene ID: 492144, updated on 17-Aug-2024

    Summary

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    Official Symbol
    GPC4provided by VGNC
    Official Full Name
    glypican 4provided by VGNC
    Primary source
    VGNC:VGNC:41374
    See related
    Ensembl:ENSCAFG00845031098
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See GPC4 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) X NC_051843.1 (105957616..106075266, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) X NC_006621.4 (90208572..90326089, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) X NC_049260.1 (105019896..105137230, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) X NC_049299.1 (103371062..103488678, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) X NC_049780.1 (105240314..105354255, complement)

    Chromosome X - NC_051843.1Genomic Context describing neighboring genes Neighboring gene ubiquitin specific peptidase 26 Neighboring gene uncharacterized LOC111094882 Neighboring gene F-box only protein 16-like Neighboring gene uncharacterized LOC111094823 Neighboring gene 40S ribosomal protein S29-like Neighboring gene glypican 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein localization to membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell surface IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in collagen-containing extracellular matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glypican-4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051843.1 Reference ROS_Cfam_1.0

      Range
      105957616..106075266 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038450900.1 → XP_038306828.1  glypican-4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0N5P4
      Conserved Domains (1) summary
      pfam01153
      Location:24 → 522
      Glypican

    2. XM_038450899.1 → XP_038306827.1  glypican-4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JGL4, A0A8C0N5P4, A0A8C0TLM2, A0A8I3QZP4
      Related
      ENSCAFP00845043483.1, ENSCAFT00845055285.1
      Conserved Domains (1) summary
      pfam01153
      Location:24 → 551
      Glypican

    3. XM_038450901.1 → XP_038306829.1  glypican-4 isoform X3

      UniProtKB/TrEMBL
      A0A8C0N5P4
      Conserved Domains (1) summary
      pfam01153
      Location:1 → 481
      Glypican

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049299.1 Alternate UMICH_Zoey_3.1

      Range
      103371062..103488678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038524372.1 → XP_038380300.1  glypican-4 isoform X2

      Conserved Domains (1) summary
      pfam01153
      Location:24 → 522
      Glypican

    2. XM_038524371.1 → XP_038380299.1  glypican-4 isoform X1

      Conserved Domains (1) summary
      pfam01153
      Location:24 → 551
      Glypican

    3. XM_038524374.1 → XP_038380302.1  glypican-4 isoform X3

      Conserved Domains (1) summary
      pfam01153
      Location:1 → 481
      Glypican

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049780.1 Alternate UNSW_CanFamBas_1.0

      Range
      105240314..105354255 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038652864.1 → XP_038508792.1  glypican-4 isoform X2

      Conserved Domains (1) summary
      pfam01153
      Location:24 → 522
      Glypican

    2. XM_038652863.1 → XP_038508791.1  glypican-4 isoform X1

      Conserved Domains (1) summary
      pfam01153
      Location:24 → 551
      Glypican

    3. XM_038652865.1 → XP_038508793.1  glypican-4 isoform X3

      Conserved Domains (1) summary
      pfam01153
      Location:1 → 481
      Glypican

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049260.1 Alternate UU_Cfam_GSD_1.0

      Range
      105019896..105137230 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038588347.1 → XP_038444275.1  glypican-4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0N5P4
      Conserved Domains (1) summary
      pfam01153
      Location:24 → 522
      Glypican

    2. XM_038588346.1 → XP_038444274.1  glypican-4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JGL4, A0A8C0N5P4, A0A8C0TLM2, A0A8I3QZP4
      Conserved Domains (1) summary
      pfam01153
      Location:24 → 551
      Glypican

    3. XM_038588348.1 → XP_038444276.1  glypican-4 isoform X3

      UniProtKB/TrEMBL
      A0A8C0N5P4
      Conserved Domains (1) summary
      pfam01153
      Location:1 → 481
      Glypican

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006621.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      90208572..90326089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014111827.3 → XP_013967302.1  glypican-4 isoform X2

      UniProtKB/TrEMBL
      A0A8C0N5P4
      Conserved Domains (1) summary
      pfam01153
      Location:24 → 522
      Glypican

    2. XM_549265.7 → XP_549265.2  glypican-4 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JGL4, A0A8C0N5P4, A0A8C0TLM2, A0A8I3QZP4
      Conserved Domains (1) summary
      pfam01153
      Location:24 → 551
      Glypican

    3. XM_038464697.1 → XP_038320625.1  glypican-4 isoform X3

      UniProtKB/TrEMBL
      A0A8C0N5P4
      Conserved Domains (1) summary
      pfam01153
      Location:1 → 481
      Glypican
    Nucleotide Protein
    Heading Accession and Version

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