CD1C CD1c molecule [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: CD1Cprovided by VGNC
Official Full Name: CD1c moleculeprovided by VGNC
Primary source: VGNC:VGNC:53115
See related: Ensembl:ENSCAFG00845017109
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as: canCD1c
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Genomic context

Location:: chromosome: 38

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	38	NC_051842.1 (23459698..23462588, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	38	NC_006620.4 (23324179..23327266, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	38	NC_049259.1 (24164884..24167766, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	38	NC_049298.1 (23209802..23212684, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	38	NC_049779.1 (23757606..23760678, complement)

Chromosome 38 - NC_051842.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables endogenous lipid antigen binding	IEA Inferred from Electronic Annotation more info	PubMed
enables exogenous lipid antigen binding	IEA Inferred from Electronic Annotation more info	PubMed
enables lipopeptide binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in antigen processing and presentation, endogenous lipid antigen via MHC class Ib	IEA Inferred from Electronic Annotation more info	PubMed
involved_in antigen processing and presentation, exogenous lipid antigen via MHC class Ib	IEA Inferred from Electronic Annotation more info	PubMed
involved_in immune response	IEA Inferred from Electronic Annotation more info	PubMed
involved_in positive regulation of T cell mediated cytotoxicity	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in external side of plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed
located_in extracellular space	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: T-cell surface glycoprotein CD1c

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001128836.1 → NP_001122308.1 T-cell surface glycoprotein CD1c precursor

See identical proteins and their annotated locations for NP_001122308.1

Status: PROVISIONAL

Source sequence(s)

EU373511

UniProtKB/TrEMBL

A0A0U3B874, B3FRK3, B3FRK4

Related

ENSCAFP00845024285.1, ENSCAFT00845030994.1

Conserved Domains (2) summary

cd07698
Location:203 → 295

IgC_MHC_I_alpha3; Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

cl08246
Location:21 → 198

MHC_I; Class I Histocompatibility antigen, domains alpha 1 and 2