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    TRIM38 tripartite motif containing 38 [ Canis lupus familiaris (dog) ]

    Gene ID: 488257, updated on 17-Aug-2024

    Summary

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    Official Symbol
    TRIM38provided by VGNC
    Official Full Name
    tripartite motif containing 38provided by VGNC
    Primary source
    VGNC:VGNC:47819
    See related
    Ensembl:ENSCAFG00845025230
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See TRIM38 in Genome Data Viewer
    Location:
    chromosome: 35
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 35 NC_051839.1 (24010055..24054777)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 35 NC_006617.4 (23805035..23818264)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 35 NC_049256.1 (25310095..25354827)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 35 NC_049295.1 (23826346..23871192)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 35 NC_049776.1 (23876839..23913812)

    Chromosome 35 - NC_051839.1Genomic Context describing neighboring genes Neighboring gene solute carrier family 17 member 3 Neighboring gene solute carrier family 17 member 2 Neighboring gene tubulin beta-3 chain-like Neighboring gene uncharacterized LOC119867682 Neighboring gene H1.2 linker histone, cluster member Neighboring gene H1.1 linker histone, cluster member Neighboring gene H3 clustered histone 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tripartite motif-containing protein 38; E3 ubiquitin-protein ligase TRIM38; LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM38

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051839.1 Reference ROS_Cfam_1.0

      Range
      24010055..24054777
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038446526.1 → XP_038302454.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM38 isoform X1

      UniProtKB/TrEMBL
      A0A8I3PKV3
      Related
      ENSCAFP00845035045.1, ENSCAFT00845044726.1
      Conserved Domains (5) summary
      TIGR02168
      Location:134 → 285
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd15815
      Location:280 → 461
      SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
      cd00162
      Location:16 → 62
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cd19761
      Location:91 → 130
      Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins
      cl17238
      Location:13 → 63
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049295.1 Alternate UMICH_Zoey_3.1

      Range
      23826346..23871192
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038520661.1 → XP_038376589.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM38 isoform X1

      Conserved Domains (5) summary
      TIGR02168
      Location:134 → 285
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd15815
      Location:280 → 461
      SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
      cd00162
      Location:16 → 62
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cd19761
      Location:91 → 130
      Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins
      cl17238
      Location:13 → 63
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049776.1 Alternate UNSW_CanFamBas_1.0

      Range
      23876839..23913812
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038648758.1 → XP_038504686.1  E3 ubiquitin-protein ligase TRIM38 isoform X5

      Conserved Domains (1) summary
      cl25655
      Location:9 → 89
      Patched; Patched family

    2. XM_038648755.1 → XP_038504683.1  E3 ubiquitin-protein ligase TRIM38 isoform X2

    3. XM_038648756.1 → XP_038504684.1  E3 ubiquitin-protein ligase TRIM38 isoform X3

    4. XM_038648757.1 → XP_038504685.1  E3 ubiquitin-protein ligase TRIM38 isoform X4

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049256.1 Alternate UU_Cfam_GSD_1.0

      Range
      25310095..25354827
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038584330.1 → XP_038440258.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM38 isoform X1

      UniProtKB/TrEMBL
      A0A8C0Z6J7, A0A8P0SFT9

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006617.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      23805035..23818264
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038463046.1 → XP_038318974.1  LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM38 isoform X1

      UniProtKB/TrEMBL
      A0A8C0Z6J7, A0A8P0SFT9
      Conserved Domains (5) summary
      TIGR02168
      Location:134 → 285
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cd15815
      Location:280 → 461
      SPRY_PRY_TRIM38; PRY/SPRY domain of tripartite motif-binding protein 38 (TRIM38), also known as Ring finger protein 15 (RNF15)
      cd00162
      Location:16 → 62
      RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]
      cd19761
      Location:91 → 130
      Bbox2_TRIM5-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins, TRIM5, TRIM6, TRIM22, TRIM34, TRIM38 and similar proteins
      cl17238
      Location:13 → 63
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    Nucleotide Protein
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