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    CILP cartilage intermediate layer protein [ Canis lupus familiaris (dog) ]

    Gene ID: 487603, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CILPprovided by VGNC
    Official Full Name
    cartilage intermediate layer proteinprovided by VGNC
    Primary source
    VGNC:VGNC:39274
    See related
    Ensembl:ENSCAFG00845025013
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CILP in Genome Data Viewer
    Location:
    chromosome: 30
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 30 NC_051834.1 (29762499..29777163, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 30 NC_006612.4 (29502954..29517542, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 30 NC_049251.1 (29997363..30011982, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 30 NC_049290.1 (29694647..29709274, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 30 NC_049771.1 (29756731..29771069, complement)

    Chromosome 30 - NC_051834.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111093306 Neighboring gene uncharacterized LOC119866918 Neighboring gene caseinolytic mitochondrial matrix peptidase chaperone subunit X Neighboring gene arginine vasopressin-induced protein 1 Neighboring gene poly(ADP-ribose) polymerase family member 16

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    cartilage intermediate layer protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051834.1 Reference ROS_Cfam_1.0

      Range
      29762499..29777163 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038442663.1 → XP_038298591.1  cartilage intermediate layer protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3S512, A0A8P0P6I8
      Related
      ENSCAFP00845034598.1, ENSCAFT00845044151.1
      Conserved Domains (5) summary
      smart00209
      Location:161 → 209
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:65 → 148
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:235 → 297
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:318 → 388
      Ig_3; Immunoglobulin domain
      cd00096
      Location:318 → 321
      Ig; Ig strand A [structural motif]

    2. XM_038442664.1 → XP_038298592.1  cartilage intermediate layer protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0TV13
      Conserved Domains (5) summary
      smart00209
      Location:148 → 196
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:52 → 135
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:222 → 284
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:305 → 375
      Ig_3; Immunoglobulin domain
      cd00096
      Location:305 → 308
      Ig; Ig strand A [structural motif]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049290.1 Alternate UMICH_Zoey_3.1

      Range
      29694647..29709274 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038517109.1 → XP_038373037.1  cartilage intermediate layer protein 1 isoform X1

      Conserved Domains (5) summary
      smart00209
      Location:161 → 209
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:65 → 148
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:235 → 297
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:318 → 388
      Ig_3; Immunoglobulin domain
      cd00096
      Location:318 → 321
      Ig; Ig strand A [structural motif]

    2. XM_038517110.1 → XP_038373038.1  cartilage intermediate layer protein 1 isoform X2

      Conserved Domains (5) summary
      smart00209
      Location:148 → 196
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:52 → 135
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:222 → 284
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:305 → 375
      Ig_3; Immunoglobulin domain
      cd00096
      Location:305 → 308
      Ig; Ig strand A [structural motif]

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049771.1 Alternate UNSW_CanFamBas_1.0

      Range
      29756731..29771069 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038645047.1 → XP_038500975.1  cartilage intermediate layer protein 1 isoform X1

    2. XM_038645048.1 → XP_038500976.1  cartilage intermediate layer protein 1 isoform X2

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049251.1 Alternate UU_Cfam_GSD_1.0

      Range
      29997363..30011982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038580724.1 → XP_038436652.1  cartilage intermediate layer protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3S512, A0A8P0P6I8
      Conserved Domains (5) summary
      smart00209
      Location:161 → 209
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:65 → 148
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:235 → 297
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:318 → 388
      Ig_3; Immunoglobulin domain
      cd00096
      Location:318 → 321
      Ig; Ig strand A [structural motif]

    2. XM_038580725.1 → XP_038436653.1  cartilage intermediate layer protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0TV13
      Conserved Domains (5) summary
      smart00209
      Location:148 → 196
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:52 → 135
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:222 → 284
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:305 → 375
      Ig_3; Immunoglobulin domain
      cd00096
      Location:305 → 308
      Ig; Ig strand A [structural motif]

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006612.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      29502954..29517542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_544728.7 → XP_544728.5  cartilage intermediate layer protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I3S512, A0A8P0P6I8
      Conserved Domains (5) summary
      smart00209
      Location:161 → 209
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:65 → 148
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:235 → 297
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:318 → 388
      Ig_3; Immunoglobulin domain
      cd00096
      Location:318 → 321
      Ig; Ig strand A [structural motif]

    2. XM_038461275.1 → XP_038317203.1  cartilage intermediate layer protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0TV13
      Conserved Domains (5) summary
      smart00209
      Location:148 → 196
      TSP1; Thrombospondin type 1 repeats
      pfam13330
      Location:52 → 135
      Mucin2_WxxW; Mucin-2 protein WxxW repeating region
      pfam13620
      Location:222 → 284
      CarboxypepD_reg; Carboxypeptidase regulatory-like domain
      pfam13927
      Location:305 → 375
      Ig_3; Immunoglobulin domain
      cd00096
      Location:305 → 308
      Ig; Ig strand A [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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