U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SOX17 SRY-box transcription factor 17 [ Canis lupus familiaris (dog) ]

    Gene ID: 486955, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    SOX17provided by VGNC
    Official Full Name
    SRY-box transcription factor 17provided by VGNC
    Primary source
    VGNC:VGNC:46676
    See related
    Ensembl:ENSCAFG00845026119
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SOX17 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 29 NC_051833.1 (6057575..6059968)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 29 NC_006611.4 (6289199..6291617)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 29 NC_049250.1 (6377256..6379697)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 29 NC_049289.1 (5992409..5994803)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 29 NC_049770.1 (6198380..6200809)

    Chromosome 29 - NC_051833.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene mitochondrial ribosomal protein L15 Neighboring gene uncharacterized LOC119866698 Neighboring gene lipoxygenase homology domain-containing protein 1-like Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene RP1 axonemal microtubule associated

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in anatomical structure morphogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in angiogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in heart development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vasculogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    transcription factor SOX-17; LOW QUALITY PROTEIN: transcription factor SOX-17
    Names
    SRY-box 17

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051833.1 Reference ROS_Cfam_1.0

      Range
      6057575..6059968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038441118.1 → XP_038297046.1  transcription factor SOX-17

      UniProtKB/TrEMBL
      A0A8C0TVS4, A0A8I3Q8S8
      Related
      ENSCAFP00845036187.1, ENSCAFT00845046084.1
      Conserved Domains (2) summary
      cd01388
      Location:67 → 138
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam12067
      Location:203 → 253
      Sox17_18_mid; Sox 17/18 central domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049289.1 Alternate UMICH_Zoey_3.1

      Range
      5992409..5994803
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038516271.1 → XP_038372199.1  transcription factor SOX-17

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049770.1 Alternate UNSW_CanFamBas_1.0

      Range
      6198380..6200809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038643486.1 → XP_038499414.1  transcription factor SOX-17

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049250.1 Alternate UU_Cfam_GSD_1.0

      Range
      6377256..6379697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038579240.1 → XP_038435168.1  LOW QUALITY PROTEIN: transcription factor SOX-17

      UniProtKB/TrEMBL
      A0A8C0TVS4

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006611.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      6289199..6291617
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_544084.6 → XP_544084.4  transcription factor SOX-17

      UniProtKB/TrEMBL
      A0A8C0TVS4, A0A8P0NPN0
      Conserved Domains (2) summary
      cd01388
      Location:67 → 138
      SOX-TCF_HMG-box; class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and ...
      pfam12067
      Location:203 → 253
      Sox17_18_mid; Sox 17/18 central domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials