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    CRYBA4 crystallin beta A4 [ Canis lupus familiaris (dog) ]

    Gene ID: 486334, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CRYBA4provided by VGNC
    Official Full Name
    crystallin beta A4provided by VGNC
    Primary source
    VGNC:VGNC:39638
    See related
    Ensembl:ENSCAFG00845029784
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See CRYBA4 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (20615647..20643528)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (20137450..20144081)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (20679442..20686080)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (20358447..20365059)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (20609294..20615918)

    Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102152804 Neighboring gene tyrosylprotein sulfotransferase 2 Neighboring gene crystallin beta B1 Neighboring gene uncharacterized LOC102153175 Neighboring gene uncharacterized LOC119866095

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Linkage and association analyses of intragenic SNPs in the canine beta-crystallin genes CRYBB1, CRYBB2, CRYBB3, CRYBA1 and CRYBA4 with primary cataracts in wire-haired Dachshunds. Müller C, et al. Anim Genet, 2008 Feb. PMID 18162101
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Linkage and association analyses of intragenic SNPs in the canine beta-crystallin genes CRYBB1, CRYBB2, CRYBB3, CRYBA1 and CRYBA4 with primary cataracts in wire-haired Dachshunds.
      Title: Linkage and association analyses of intragenic SNPs in the canine beta-crystallin genes CRYBB1, CRYBB2, CRYBB3, CRYBA1 and CRYBA4 with primary cataracts in wire-haired Dachshunds.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of eye lens IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lens development in camera-type eye IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in visual perception IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    beta-crystallin A4
    Names
    beta A4-crystallin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080897.1 → NP_001074366.1  beta-crystallin A4

      See identical proteins and their annotated locations for NP_001074366.1

      Status: PROVISIONAL

      Source sequence(s)
      EF195231
      UniProtKB/Swiss-Prot
      A2ICR5
      UniProtKB/TrEMBL
      A0A8C0LEH3
      Related
      ENSCAFP00845041436.1, ENSCAFT00845052778.1
      Conserved Domains (1) summary
      pfam00030
      Location:13 → 97
      Crystall; Beta/Gamma crystallin

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051830.1 Reference ROS_Cfam_1.0

      Range
      20615647..20643528
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038436089.1 → XP_038292017.1  beta-crystallin A4 isoform X1

      UniProtKB/Swiss-Prot
      A2ICR5
      UniProtKB/TrEMBL
      A0A8C0LEH3
      Conserved Domains (1) summary
      pfam00030
      Location:13 → 97
      Crystall; Beta/Gamma crystallin

    2. XM_038436090.1 → XP_038292018.1  beta-crystallin A4 isoform X1

      UniProtKB/Swiss-Prot
      A2ICR5
      UniProtKB/TrEMBL
      A0A8C0LEH3
      Conserved Domains (1) summary
      pfam00030
      Location:13 → 97
      Crystall; Beta/Gamma crystallin

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049286.1 Alternate UMICH_Zoey_3.1

      Range
      20358447..20365059
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

      Range
      20609294..20615918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

      Range
      20679442..20686080
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      20137450..20144081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A2ICR5.1 GenPept UniProtKB/Swiss-Prot:A2ICR5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials