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    PHOX2A paired like homeobox 2A [ Canis lupus familiaris (dog) ]

    Gene ID: 485208, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PHOX2Aprovided by VGNC
    Official Full Name
    paired like homeobox 2Aprovided by VGNC
    Primary source
    VGNC:VGNC:44507
    See related
    Ensembl:ENSCAFG00845010206
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See PHOX2A in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (26104275..26108976)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (25665337..25670038)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (26013496..26018198)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (25895746..25900444)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (26111941..26116643)

    Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene ClpB family mitochondrial disaggregase Neighboring gene 60S ribosomal protein L35a-like Neighboring gene uncharacterized LOC119864984 Neighboring gene inositol polyphosphate phosphatase like 1 Neighboring gene folate receptor beta Neighboring gene folate receptor alpha

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    paired mesoderm homeobox protein 2A
    Names
    paired-like (aristaless) homeobox 2a

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051825.1 Reference ROS_Cfam_1.0

      Range
      26104275..26108976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038430228.1 → XP_038286156.1  paired mesoderm homeobox protein 2A

      UniProtKB/TrEMBL
      A0A8C0QUE1, A0A8C0T5R3, A0A8I3N9C5
      Related
      ENSCAFP00845013987.1, ENSCAFT00845017956.1
      Conserved Domains (1) summary
      pfam00046
      Location:94 → 147
      Homeobox; Homeobox domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049281.1 Alternate UMICH_Zoey_3.1

      Range
      25895746..25900444
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038505583.1 → XP_038361511.1  paired mesoderm homeobox protein 2A

      Conserved Domains (1) summary
      pfam00046
      Location:94 → 147
      Homeobox; Homeobox domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

      Range
      26111941..26116643
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038632936.1 → XP_038488864.1  paired mesoderm homeobox protein 2A

      Conserved Domains (1) summary
      pfam00046
      Location:94 → 147
      Homeobox; Homeobox domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

      Range
      26013496..26018198
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038568763.1 → XP_038424691.1  paired mesoderm homeobox protein 2A

      UniProtKB/TrEMBL
      A0A8C0QUE1, A0A8C0T5R3, A0A8I3N9C5
      Conserved Domains (1) summary
      pfam00046
      Location:94 → 147
      Homeobox; Homeobox domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      25665337..25670038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_542326.7 → XP_542326.2  paired mesoderm homeobox protein 2A

      See identical proteins and their annotated locations for XP_542326.2

      UniProtKB/TrEMBL
      A0A8C0QUE1, A0A8C0T5R3, A0A8I3N9C5
      Conserved Domains (1) summary
      pfam00046
      Location:94 → 147
      Homeobox; Homeobox domain
    Nucleotide Protein
    Heading Accession and Version

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    Research Materials