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    XAB2 XPA binding protein 2 [ Canis lupus familiaris (dog) ]

    Gene ID: 484995, updated on 17-Aug-2024

    Summary

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    Official Symbol
    XAB2provided by VGNC
    Official Full Name
    XPA binding protein 2provided by VGNC
    Primary source
    VGNC:VGNC:48445
    See related
    Ensembl:ENSCAFG00845027506
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See XAB2 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (52921824..52935267, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (52196600..52210038, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (52800111..52813660, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (52125624..52139066, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (52569168..52582655, complement)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene patatin like phospholipase domain containing 6 Neighboring gene mucolipin TRP cation channel 1 Neighboring gene uncharacterized LOC119864757 Neighboring gene calmodulin regulated spectrin associated protein family member 3 Neighboring gene protein PET100 homolog, mitochondrial Neighboring gene Purkinje cell protein 2 Neighboring gene syntaxin binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Light-activated BioID - an optically activated proximity labeling system to study protein-protein interactions. Shafraz O, et al. J Cell Sci, 2023 Oct 1. PMID 37756605, Free PMC Article
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in generation of catalytic spliceosome for first transesterification step IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Prp19 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of U2-type catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of post-mRNA release spliceosomal complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor SYF1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      52921824..52935267 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038428769.1 → XP_038284697.1  pre-mRNA-splicing factor SYF1

      UniProtKB/TrEMBL
      A0A8C0PGY5, A0A8C0R668, A0A8C0RT70, A0A8I3Q207
      Related
      ENSCAFP00845038058.1, ENSCAFT00845048515.1
      Conserved Domains (3) summary
      COG0457
      Location:272 → 549
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:433 → 461
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:396 → 462
      TPR_12; Tetratricopeptide repeat

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      52125624..52139066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038504403.1 → XP_038360331.1  pre-mRNA-splicing factor SYF1

      Conserved Domains (3) summary
      COG0457
      Location:272 → 549
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:433 → 461
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:396 → 462
      TPR_12; Tetratricopeptide repeat

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      52569168..52582655 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038631594.1 → XP_038487522.1  pre-mRNA-splicing factor SYF1

      Conserved Domains (3) summary
      COG0457
      Location:272 → 549
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:433 → 461
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:396 → 462
      TPR_12; Tetratricopeptide repeat

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      52800111..52813660 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038567446.1 → XP_038423374.1  pre-mRNA-splicing factor SYF1

      UniProtKB/TrEMBL
      A0A8C0PGY5, A0A8C0R668, A0A8C0RT70, A0A8I3Q207
      Conserved Domains (3) summary
      COG0457
      Location:272 → 549
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:433 → 461
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:396 → 462
      TPR_12; Tetratricopeptide repeat

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      52196600..52210038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_542113.6 → XP_542113.3  pre-mRNA-splicing factor SYF1

      UniProtKB/TrEMBL
      A0A8C0PGY5, A0A8C0R668, A0A8C0RT70, A0A8I3Q207
      Conserved Domains (3) summary
      COG0457
      Location:272 → 549
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      sd00006
      Location:433 → 461
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:396 → 462
      TPR_12; Tetratricopeptide repeat
    Nucleotide Protein
    Heading Accession and Version

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