LYPD3 LY6/PLAUR domain containing 3 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: LYPD3provided by VGNC
Official Full Name: LY6/PLAUR domain containing 3provided by VGNC
Primary source: VGNC:VGNC:42885
See related: Ensembl:ENSCAFG00845000436
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	1	NC_051805.1 (112245066..112248887)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	1	NC_006583.4 (111114615..111118438)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	1	NC_049222.1 (112351223..112355047)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	1	NC_049261.1 (111833190..111837011)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	1	NC_049742.1 (111466962..111470784)

Chromosome 1 - NC_051805.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Component	Evidence Code	Pubs
located_in plasma membrane	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: ly6/PLAUR domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051805.1 Reference ROS_Cfam_1.0

Range

112245066..112248887

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038653788.1 → XP_038509716.1 ly6/PLAUR domain-containing protein 3

UniProtKB/TrEMBL

A0A8C0YYI9, A0A8I3MAT6

Related

ENSCAFP00845000504.1, ENSCAFT00845000696.1

Conserved Domains (2) summary

cd00117
Location:36 → 121

LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

pfam00021
Location:145 → 227

UPAR_LY6; u-PAR/Ly-6 domain

Alternate UMICH_Zoey_3.1

Genomic

NC_049261.1 Alternate UMICH_Zoey_3.1

Range

111833190..111837011

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038465064.1 → XP_038320992.1 ly6/PLAUR domain-containing protein 3

Conserved Domains (2) summary

cd00117
Location:36 → 121

LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

pfam00021
Location:145 → 227

UPAR_LY6; u-PAR/Ly-6 domain

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049742.1 Alternate UNSW_CanFamBas_1.0

Range

111466962..111470784

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038589866.1 → XP_038445794.1 ly6/PLAUR domain-containing protein 3

Conserved Domains (2) summary

cd00117
Location:36 → 121

LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

pfam00021
Location:145 → 227

UPAR_LY6; u-PAR/Ly-6 domain

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049222.1 Alternate UU_Cfam_GSD_1.0

Range

112351223..112355047

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038525659.1 → XP_038381587.1 ly6/PLAUR domain-containing protein 3

UniProtKB/TrEMBL

A0A8C0YYI9, A0A8I3MAT6

Conserved Domains (2) summary

cd00117
Location:36 → 121

LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

pfam00021
Location:145 → 227

UPAR_LY6; u-PAR/Ly-6 domain

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

111114615..111118438

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_541585.6 → XP_541585.2 ly6/PLAUR domain-containing protein 3

UniProtKB/TrEMBL

A0A8C0YYI9, A0A8I3MAT6

Conserved Domains (2) summary

cd00117
Location:36 → 121

LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

pfam00021
Location:145 → 227

UPAR_LY6; u-PAR/Ly-6 domain