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    SLC1A4 solute carrier family 1 member 4 [ Canis lupus familiaris (dog) ]

    Gene ID: 481391, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SLC1A4provided by VGNC
    Official Full Name
    solute carrier family 1 member 4provided by VGNC
    Primary source
    VGNC:VGNC:46264
    See related
    Ensembl:ENSCAFG00845020925
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    ASCT1
    Orthologs
    human mouse all
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    Genomic context

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    See SLC1A4 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (65493157..65518318)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (64369739..64394932)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (65774013..65799174)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (65172083..65197216)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (65480918..65503851)

    Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119873782 Neighboring gene uncharacterized LOC111097786 Neighboring gene uncharacterized LOC119873699 Neighboring gene U1 small nuclear ribonucleoprotein C-like Neighboring gene centrosomal protein 68

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Canine ASCT1 and ASCT2 are functional receptors for RD-114 virus in dogs. Yoshikawa R, et al. J Gen Virol, 2012 Mar. PMID 22131312
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables L-alanine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-aspartate transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-serine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables L-threonine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables symporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-glutamate transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in L-serine transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    neutral amino acid transporter A
    Names
    alanine/serine/cysteine/threonine transporter 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051814.1 Reference ROS_Cfam_1.0

      Range
      65493157..65518318
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038680770.1 → XP_038536698.1  neutral amino acid transporter A

      UniProtKB/TrEMBL
      A0A8C0LN80, A0A8I3S220
      Related
      ENSCAFP00845028925.1, ENSCAFT00845036942.1
      Conserved Domains (1) summary
      pfam00375
      Location:69 → 474
      SDF; Sodium:dicarboxylate symporter family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049270.1 Alternate UMICH_Zoey_3.1

      Range
      65172083..65197216
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038489460.1 → XP_038345388.1  neutral amino acid transporter A

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

      Range
      65480918..65503851
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038615383.1 → XP_038471311.1  neutral amino acid transporter A

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

      Range
      65774013..65799174
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038551449.1 → XP_038407377.1  neutral amino acid transporter A

      UniProtKB/TrEMBL
      A0A8C0LN80, A0A8C0Q4G4, A0A8P0S969

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      64369739..64394932
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_538511.7 → XP_538511.4  neutral amino acid transporter A

      UniProtKB/TrEMBL
      A0A8C0LN80, A0A8C0Q4G4, A0A8P0S969
      Conserved Domains (1) summary
      pfam00375
      Location:69 → 474
      SDF; Sodium:dicarboxylate symporter family
    Nucleotide Protein
    Heading Accession and Version

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