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    RDH5 retinol dehydrogenase 5 [ Canis lupus familiaris (dog) ]

    Gene ID: 481098, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RDH5provided by VGNC
    Official Full Name
    retinol dehydrogenase 5provided by VGNC
    Primary source
    VGNC:VGNC:45454
    See related
    Ensembl:ENSCAFG00845005441
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See RDH5 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (127659..132829)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (182788..187948)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (472362..477524)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (105355..110512)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (348472..353628)

    Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene thiol methyltransferase 1B Neighboring gene integrin subunit alpha 7 Neighboring gene biogenesis of lysosomal organelles complex 1 subunit 1 Neighboring gene CD63 molecule Neighboring gene growth differentiation factor 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    11-cis retinol dehydrogenase; retinol dehydrogenase 5
    Names
    biogenesis of lysosome-related organelles complex-1, subunit 1
    retinol dehydrogenase 5 (11-cis/9-cis)
    XP_038343620.1
    XP_038343621.1
    XP_038343622.1
    XP_038405508.1
    XP_038405509.1
    XP_038405510.1
    XP_038469480.1
    XP_038469481.1
    XP_038469482.1
    XP_038494991.1
    XP_038495000.1
    XP_038495011.1
    XP_038534842.1
    XP_038534843.1
    XP_038534844.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051814.1 Reference ROS_Cfam_1.0

      Range
      127659..132829
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038678914.1 → XP_038534842.1  retinol dehydrogenase 5 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LRK9, A0A8I3MTG2, A0A8P0N389
      Related
      ENSCAFP00845007585.1, ENSCAFT00845009701.1
      Conserved Domains (1) summary
      cd09805
      Location:84 → 360
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    2. XM_038678915.1 → XP_038534843.1  retinol dehydrogenase 5 isoform X2

      UniProtKB/TrEMBL
      A0A8C0QE71
      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    3. XM_038678916.1 → XP_038534844.1  retinol dehydrogenase 5 isoform X2

      UniProtKB/TrEMBL
      A0A8C0QE71
      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049270.1 Alternate UMICH_Zoey_3.1

      Range
      105355..110512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038487692.1 → XP_038343620.1  retinol dehydrogenase 5 isoform X1

      Conserved Domains (1) summary
      cd09805
      Location:84 → 360
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    2. XM_038487693.1 → XP_038343621.1  retinol dehydrogenase 5 isoform X2

      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    3. XM_038487694.1 → XP_038343622.1  retinol dehydrogenase 5 isoform X2

      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

      Range
      348472..353628
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038613552.1 → XP_038469480.1  retinol dehydrogenase 5 isoform X1

      Conserved Domains (1) summary
      cd09805
      Location:84 → 360
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    2. XM_038613553.1 → XP_038469481.1  retinol dehydrogenase 5 isoform X2

      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    3. XM_038613554.1 → XP_038469482.1  retinol dehydrogenase 5 isoform X2

      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

      Range
      472362..477524
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038549580.1 → XP_038405508.1  retinol dehydrogenase 5 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LRK9, A0A8I3MTG2, A0A8P0N389
      Conserved Domains (1) summary
      cd09805
      Location:84 → 360
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    2. XM_038549581.1 → XP_038405509.1  retinol dehydrogenase 5 isoform X2

      UniProtKB/TrEMBL
      A0A8C0QE71
      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    3. XM_038549582.1 → XP_038405510.1  retinol dehydrogenase 5 isoform X2

      UniProtKB/TrEMBL
      A0A8C0QE71
      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      182788..187948
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038639063.1 → XP_038494991.1  retinol dehydrogenase 5 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LRK9, A0A8I3MTG2, A0A8P0N389
      Conserved Domains (1) summary
      cd09805
      Location:84 → 360
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    2. XM_038639072.1 → XP_038495000.1  retinol dehydrogenase 5 isoform X2

      UniProtKB/TrEMBL
      A0A8C0QE71
      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs

    3. XM_038639083.1 → XP_038495011.1  retinol dehydrogenase 5 isoform X2

      UniProtKB/TrEMBL
      A0A8C0QE71
      Conserved Domains (1) summary
      cd09805
      Location:30 → 306
      type2_17beta_HSD-like_SDR_c; human 17beta-hydroxysteroid dehydrogenase type 2 (type 2 17beta-HSD)-like, classical (c) SDRs
    Nucleotide Protein
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