PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: PAFAH1B1provided by VGNC
Official Full Name: platelet activating factor acetylhydrolase 1b regulatory subunit 1provided by VGNC
Primary source: VGNC:VGNC:44239
See related: Ensembl:ENSCAFG00845014548
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 9

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	9	NC_051813.1 (47482963..47566431)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	9	NC_006591.4 (45800900..45884016)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	9	NC_049230.1 (46599366..46680302)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	9	NC_049269.1 (46250595..46333659)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	9	NC_049750.1 (46544618..46627828)

Chromosome 9 - NC_051813.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Markers

WI-15114 (e-PCR)
- UniSTS:25888

Pafah1b1 (e-PCR), detects polymorphism
- UniSTS:499130

RH48326 (e-PCR)
- UniSTS:91339

SHGC-130305 (e-PCR)
- UniSTS:183287

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: platelet-activating factor acetylhydrolase IB subunit beta

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051813.1 Reference ROS_Cfam_1.0

Range

47482963..47566431

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038677746.1 → XP_038533674.1 platelet-activating factor acetylhydrolase IB subunit beta

UniProtKB/TrEMBL

A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2

Related

ENSCAFP00845020543.1, ENSCAFT00845026052.1

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH
XM_038677747.1 → XP_038533675.1 platelet-activating factor acetylhydrolase IB subunit beta

UniProtKB/TrEMBL

A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH

Alternate UMICH_Zoey_3.1

Genomic

NC_049269.1 Alternate UMICH_Zoey_3.1

Range

46250595..46333659

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038486664.1 → XP_038342592.1 platelet-activating factor acetylhydrolase IB subunit beta

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH
XM_038486665.1 → XP_038342593.1 platelet-activating factor acetylhydrolase IB subunit beta

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049750.1 Alternate UNSW_CanFamBas_1.0

Range

46544618..46627828

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038612470.1 → XP_038468398.1 platelet-activating factor acetylhydrolase IB subunit beta

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH
XM_038612471.1 → XP_038468399.1 platelet-activating factor acetylhydrolase IB subunit beta

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049230.1 Alternate UU_Cfam_GSD_1.0

Range

46599366..46680302

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038548533.1 → XP_038404461.1 platelet-activating factor acetylhydrolase IB subunit beta

UniProtKB/TrEMBL

A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH
XM_038548534.1 → XP_038404462.1 platelet-activating factor acetylhydrolase IB subunit beta

UniProtKB/TrEMBL

A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

45800900..45884016

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_849389.5 → XP_854482.1 platelet-activating factor acetylhydrolase IB subunit beta

See identical proteins and their annotated locations for XP_854482.1

UniProtKB/TrEMBL

A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH
XM_005624952.4 → XP_005625009.1 platelet-activating factor acetylhydrolase IB subunit beta

See identical proteins and their annotated locations for XP_005625009.1

UniProtKB/TrEMBL

A0A8C0Q2T5, A0A8I3NIJ2, A0A8I3NR26, A0A8P0SYD2

Conserved Domains (3) summary

cd00200
Location:104 → 408

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:111 → 148

7WD40; WD40 repeat [structural motif]

pfam08513
Location:10 → 34

LisH