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    PNPO pyridoxamine 5'-phosphate oxidase [ Canis lupus familiaris (dog) ]

    Gene ID: 480540, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PNPOprovided by VGNC
    Official Full Name
    pyridoxamine 5'-phosphate oxidaseprovided by VGNC
    Primary source
    VGNC:VGNC:44759
    See related
    Ensembl:ENSCAFG00845015876
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See PNPO in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 9 NC_051813.1 (25046154..25052008)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 9 NC_006591.4 (23719116..23724734)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 9 NC_049230.1 (24203867..24209469)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 9 NC_049269.1 (23816257..23821968)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 9 NC_049750.1 (24077084..24082942)

    Chromosome 9 - NC_051813.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111097363 Neighboring gene Sp6 transcription factor Neighboring gene uncharacterized LOC102154875 Neighboring gene Sp2 transcription factor Neighboring gene peptidyl-prolyl cis-trans isomerase B-like Neighboring gene proline rich 15 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables FMN binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxamine phosphate oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pyridoxal phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in pyridoxine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pyridoxine-5'-phosphate oxidase
    XP_022278764.1
    XP_038341690.1
    XP_038341691.1
    XP_038341692.1
    XP_038341693.1
    XP_038403467.1
    XP_038403468.1
    XP_038403469.1
    XP_038403470.1
    XP_038467443.1
    XP_038467444.1
    XP_038467445.1
    XP_038467446.1
    XP_038532638.1
    XP_038532640.1
    XP_038532641.1
    XP_038532642.1
    XP_537661.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051813.1 Reference ROS_Cfam_1.0

      Range
      25046154..25052008
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038676713.1 → XP_038532641.1  pyridoxine-5'-phosphate oxidase isoform X3

      Conserved Domains (1) summary
      cl29141
      Location:57 → 245
      PLN02918; pyridoxine (pyridoxamine) 5'-phosphate oxidase

    2. XM_038676710.1 → XP_038532638.1  pyridoxine-5'-phosphate oxidase isoform X1

      UniProtKB/TrEMBL
      A0A8C0RAX7, A0A8I3S1S1
      Conserved Domains (1) summary
      TIGR00558
      Location:57 → 288
      pdxH; pyridoxamine-phosphate oxidase

    3. XM_038676714.1 → XP_038532642.1  pyridoxine-5'-phosphate oxidase isoform X4

      UniProtKB/TrEMBL
      A0A8C0M3Z3, A0A8C0RAX7, A0A8I3NTJ5, A0A8I3S1S1
      Related
      ENSCAFP00845022299.1, ENSCAFT00845028346.1
      Conserved Domains (1) summary
      cl29141
      Location:57 → 218
      PLN02918; pyridoxine (pyridoxamine) 5'-phosphate oxidase

    4. XM_038676712.1 → XP_038532640.1  pyridoxine-5'-phosphate oxidase isoform X2

      UniProtKB/TrEMBL
      A0A8C0LH76, A0A8C0M2A5, A0A8C0RAX7, A0A8I3RZ18, A0A8I3S1S1
      Related
      ENSCAFP00845022245.1, ENSCAFT00845028274.1
      Conserved Domains (1) summary
      TIGR00558
      Location:57 → 261
      pdxH; pyridoxamine-phosphate oxidase

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049269.1 Alternate UMICH_Zoey_3.1

      Range
      23816257..23821968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038485764.1 → XP_038341692.1  pyridoxine-5'-phosphate oxidase isoform X3

      Conserved Domains (1) summary
      cl29141
      Location:57 → 245
      PLN02918; pyridoxine (pyridoxamine) 5'-phosphate oxidase

    2. XM_038485762.1 → XP_038341690.1  pyridoxine-5'-phosphate oxidase isoform X1

      Conserved Domains (1) summary
      TIGR00558
      Location:57 → 288
      pdxH; pyridoxamine-phosphate oxidase

    3. XM_038485765.1 → XP_038341693.1  pyridoxine-5'-phosphate oxidase isoform X4

      Conserved Domains (1) summary
      cl29141
      Location:57 → 218
      PLN02918; pyridoxine (pyridoxamine) 5'-phosphate oxidase

    4. XM_038485763.1 → XP_038341691.1  pyridoxine-5'-phosphate oxidase isoform X2

      Conserved Domains (1) summary
      TIGR00558
      Location:57 → 261
      pdxH; pyridoxamine-phosphate oxidase

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049750.1 Alternate UNSW_CanFamBas_1.0

      Range
      24077084..24082942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038611517.1 → XP_038467445.1  pyridoxine-5'-phosphate oxidase isoform X3

    2. XM_038611515.1 → XP_038467443.1  pyridoxine-5'-phosphate oxidase isoform X1

    3. XM_038611518.1 → XP_038467446.1  pyridoxine-5'-phosphate oxidase isoform X4

      Conserved Domains (1) summary
      cl29141
      Location:57 → 218
      PLN02918; pyridoxine (pyridoxamine) 5'-phosphate oxidase

    4. XM_038611516.1 → XP_038467444.1  pyridoxine-5'-phosphate oxidase isoform X2

      Conserved Domains (1) summary
      TIGR00558
      Location:57 → 261
      pdxH; pyridoxamine-phosphate oxidase

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049230.1 Alternate UU_Cfam_GSD_1.0

      Range
      24203867..24209469
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038547541.1 → XP_038403469.1  pyridoxine-5'-phosphate oxidase isoform X3

      Conserved Domains (1) summary
      cl29141
      Location:57 → 245
      PLN02918; pyridoxine (pyridoxamine) 5'-phosphate oxidase

    2. XM_038547539.1 → XP_038403467.1  pyridoxine-5'-phosphate oxidase isoform X1

      UniProtKB/TrEMBL
      A0A8C0RAX7, A0A8I3S1S1
      Conserved Domains (1) summary
      TIGR00558
      Location:57 → 288
      pdxH; pyridoxamine-phosphate oxidase

    3. XM_038547542.1 → XP_038403470.1  pyridoxine-5'-phosphate oxidase isoform X4

      UniProtKB/TrEMBL
      A0A8C0M3Z3, A0A8C0RAX7, A0A8I3NTJ5, A0A8I3S1S1
      Conserved Domains (1) summary
      cl29141
      Location:57 → 218
      PLN02918; pyridoxine (pyridoxamine) 5'-phosphate oxidase

    4. XM_038547540.1 → XP_038403468.1  pyridoxine-5'-phosphate oxidase isoform X2

      UniProtKB/TrEMBL
      A0A8C0LH76, A0A8C0M2A5, A0A8C0RAX7, A0A8I3RZ18, A0A8I3S1S1
      Conserved Domains (1) summary
      TIGR00558
      Location:57 → 261
      pdxH; pyridoxamine-phosphate oxidase

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006591.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      23719116..23724734
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_022423056.2 → XP_022278764.1  pyridoxine-5'-phosphate oxidase isoform X4

      UniProtKB/TrEMBL
      A0A8C0M3Z3, A0A8C0RAX7, A0A8I3NTJ5, A0A8I3S1S1
      Conserved Domains (1) summary
      cl29141
      Location:57 → 218
      PLN02918; pyridoxine (pyridoxamine) 5'-phosphate oxidase

    2. XM_537661.7 → XP_537661.2  pyridoxine-5'-phosphate oxidase isoform X2

      UniProtKB/TrEMBL
      A0A8C0LH76, A0A8C0M2A5, A0A8C0RAX7, A0A8I3RZ18, A0A8I3S1S1
      Conserved Domains (1) summary
      TIGR00558
      Location:57 → 261
      pdxH; pyridoxamine-phosphate oxidase
    Nucleotide Protein
    Heading Accession and Version

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