U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    VTI1B vesicle transport through interaction with t-SNAREs 1B [ Canis lupus familiaris (dog) ]

    Gene ID: 480365, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    VTI1Bprovided by VGNC
    Official Full Name
    vesicle transport through interaction with t-SNAREs 1Bprovided by VGNC
    Primary source
    VGNC:VGNC:48317
    See related
    Ensembl:ENSCAFG00845003511
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See VTI1B in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (41848085..41879357, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (41312675..41341742, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (41900036..41929107, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (41467045..41496369, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (41540458..41569783, complement)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene pleckstrin homology, MyTH4 and FERM domain containing H1 Neighboring gene uncharacterized LOC111097081 Neighboring gene phosphatidylinositol glycan anchor biosynthesis class H Neighboring gene arginase 2 Neighboring gene uncharacterized LOC119872879 Neighboring gene retinol dehydrogenase 11 Neighboring gene retinol dehydrogenase 12

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi to vacuole transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in macroautophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of protein localization to plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion with Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ER to Golgi transport vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    vesicle transport through interaction with t-SNAREs homolog 1B

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      41848085..41879357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038673956.1 → XP_038529884.1  vesicle transport through interaction with t-SNAREs homolog 1B

      UniProtKB/TrEMBL
      A0A8C0K086, A0A8C0RLI9, A0A8I3MP68, A0A8I3PQB4
      Related
      ENSCAFP00845004977.1, ENSCAFT00845006268.1
      Conserved Domains (2) summary
      cd15890
      Location:136 → 197
      SNARE_Vti1b; SNARE motif of Vti1b-like
      pfam05008
      Location:18 → 96
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      41467045..41496369 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038483565.1 → XP_038339493.1  vesicle transport through interaction with t-SNAREs homolog 1B

      Conserved Domains (2) summary
      cd15890
      Location:136 → 197
      SNARE_Vti1b; SNARE motif of Vti1b-like
      pfam05008
      Location:18 → 96
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      41540458..41569783 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038609144.1 → XP_038465072.1  vesicle transport through interaction with t-SNAREs homolog 1B

      Conserved Domains (2) summary
      cd15890
      Location:136 → 197
      SNARE_Vti1b; SNARE motif of Vti1b-like
      pfam05008
      Location:18 → 96
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      41900036..41929107 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038545034.1 → XP_038400962.1  vesicle transport through interaction with t-SNAREs homolog 1B

      UniProtKB/TrEMBL
      A0A8C0K086, A0A8C0RLI9, A0A8I3MP68, A0A8I3PQB4
      Conserved Domains (2) summary
      cd15890
      Location:136 → 197
      SNARE_Vti1b; SNARE motif of Vti1b-like
      pfam05008
      Location:18 → 96
      V-SNARE; Vesicle transport v-SNARE protein N-terminus

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      41312675..41341742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_537489.7 → XP_537489.2  vesicle transport through interaction with t-SNAREs homolog 1B

      UniProtKB/TrEMBL
      A0A8C0K086, A0A8C0RLI9, A0A8I3MP68, A0A8I3PQB4
      Conserved Domains (2) summary
      cd15890
      Location:136 → 197
      SNARE_Vti1b; SNARE motif of Vti1b-like
      pfam05008
      Location:18 → 96
      V-SNARE; Vesicle transport v-SNARE protein N-terminus
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials