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    SCFD1 sec1 family domain containing 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 480281, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SCFD1provided by VGNC
    Official Full Name
    sec1 family domain containing 1provided by VGNC
    Primary source
    VGNC:VGNC:45903
    See related
    Ensembl:ENSCAFG00845010280
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SCFD1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (10071833..10178235)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (9897070..10003576)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (10108002..10214379)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (9750624..9856891)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (9831913..9938667)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119879719 Neighboring gene 60S ribosomal protein L31-like Neighboring gene G2/M-phase specific E3 ubiquitin protein ligase Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA18 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Light-activated BioID - an optically activated proximity labeling system to study protein-protein interactions. Shafraz O, et al. J Cell Sci, 2023 Oct 1. PMID 37756605, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables syntaxin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sec1 family domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      10071833..10178235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038673318.1 → XP_038529246.1  sec1 family domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LIW0, A0A8C0N0I1, A0A8I3NFJ9, A0A8I3RXY9, A0A8P0TU46
      Related
      ENSCAFP00845014129.1, ENSCAFT00845018128.1
      Conserved Domains (1) summary
      pfam00995
      Location:43 → 628
      Sec1; Sec1 family

    2. XM_038673320.1 → XP_038529248.1  sec1 family domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:66 → 592
      Sec1; Sec1 family

    3. XM_038673319.1 → XP_038529247.1  sec1 family domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:15 → 594
      Sec1; Sec1 family

    4. XM_038673322.1 → XP_038529250.1  sec1 family domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0MVI7, A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:1 → 562
      Sec1; Sec1 family

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      9750624..9856891
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038482947.1 → XP_038338875.1  sec1 family domain-containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam00995
      Location:43 → 628
      Sec1; Sec1 family

    2. XM_038482949.1 → XP_038338877.1  sec1 family domain-containing protein 1 isoform X3

      Conserved Domains (1) summary
      pfam00995
      Location:66 → 592
      Sec1; Sec1 family

    3. XM_038482948.1 → XP_038338876.1  sec1 family domain-containing protein 1 isoform X2

      Conserved Domains (1) summary
      pfam00995
      Location:15 → 594
      Sec1; Sec1 family

    4. XM_038482950.1 → XP_038338878.1  sec1 family domain-containing protein 1 isoform X4

      Conserved Domains (1) summary
      pfam00995
      Location:1 → 562
      Sec1; Sec1 family

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      9831913..9938667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038608510.1 → XP_038464438.1  sec1 family domain-containing protein 1 isoform X1

      Conserved Domains (1) summary
      pfam00995
      Location:43 → 628
      Sec1; Sec1 family

    2. XM_038608512.1 → XP_038464440.1  sec1 family domain-containing protein 1 isoform X3

      Conserved Domains (1) summary
      pfam00995
      Location:66 → 592
      Sec1; Sec1 family

    3. XM_038608511.1 → XP_038464439.1  sec1 family domain-containing protein 1 isoform X2

      Conserved Domains (1) summary
      pfam00995
      Location:15 → 594
      Sec1; Sec1 family

    4. XM_038608513.1 → XP_038464441.1  sec1 family domain-containing protein 1 isoform X4

      Conserved Domains (1) summary
      pfam00995
      Location:1 → 562
      Sec1; Sec1 family

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      10108002..10214379
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038544391.1 → XP_038400319.1  sec1 family domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LIW0, A0A8C0N0I1, A0A8I3NFJ9, A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:43 → 628
      Sec1; Sec1 family

    2. XM_038544393.1 → XP_038400321.1  sec1 family domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:66 → 592
      Sec1; Sec1 family

    3. XM_038544392.1 → XP_038400320.1  sec1 family domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:15 → 594
      Sec1; Sec1 family

    4. XM_038544394.1 → XP_038400322.1  sec1 family domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0MVI7, A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:1 → 562
      Sec1; Sec1 family

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      9897070..10003576
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_537403.7 → XP_537403.4  sec1 family domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LIW0, A0A8C0N0I1, A0A8I3NFJ9, A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:43 → 628
      Sec1; Sec1 family

    2. XM_022421878.2 → XP_022277586.1  sec1 family domain-containing protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:66 → 592
      Sec1; Sec1 family

    3. XM_038584739.1 → XP_038440667.1  sec1 family domain-containing protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:15 → 594
      Sec1; Sec1 family

    4. XM_005623289.4 → XP_005623346.1  sec1 family domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8C0MVI7, A0A8I3RXY9, A0A8P0TU46
      Conserved Domains (1) summary
      pfam00995
      Location:1 → 562
      Sec1; Sec1 family
    Nucleotide Protein
    Heading Accession and Version

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