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    ABCB6 ATP binding cassette subfamily B member 6 [ Canis lupus familiaris (dog) ]

    Gene ID: 478914, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ABCB6provided by VGNC
    Official Full Name
    ATP binding cassette subfamily B member 6provided by VGNC
    Primary source
    VGNC:VGNC:49115
    See related
    Ensembl:ENSCAFG00845029425
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ABCB6 in Genome Data Viewer
    Location:
    chromosome: 37
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 37 NC_051841.1 (25775702..25782979, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 37 NC_006619.4 (26586363..26593649, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 37 NC_049258.1 (25636067..25643357, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 37 NC_049297.1 (25680124..25687392, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 37 NC_049778.1 (25615230..25622496, complement)

    Chromosome 37 - NC_051841.1Genomic Context describing neighboring genes Neighboring gene reticulophagy regulator family member 2 Neighboring gene zinc finger AN1-type containing 2B Neighboring gene autophagy related 9A Neighboring gene ankyrin repeat and zinc finger peptidyl tRNA hydrolase 1 Neighboring gene galactosidase beta 1 like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ABC-type heme transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables heme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in heme transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-binding cassette sub-family B member 6, mitochondrial
    Names
    ATG9 autophagy related 9 homolog A
    ATP binding cassette subfamily B member 6 (Langereis blood group)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051841.1 Reference ROS_Cfam_1.0

      Range
      25775702..25782979 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038448000.1 → XP_038303928.1  ATP-binding cassette sub-family B member 6, mitochondrial

      UniProtKB/TrEMBL
      A0A8C0TSD5, A0A8I3SCB4
      Related
      ENSCAFP00845040894.1, ENSCAFT00845052138.1
      Conserved Domains (2) summary
      COG5265
      Location:331 → 825
      ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
      pfam16185
      Location:6 → 257
      MTABC_N; Mitochondrial ABC-transporter N-terminal five TM region

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049297.1 Alternate UMICH_Zoey_3.1

      Range
      25680124..25687392 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038521983.1 → XP_038377911.1  ATP-binding cassette sub-family B member 6, mitochondrial

      Conserved Domains (2) summary
      COG5265
      Location:331 → 825
      ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
      pfam16185
      Location:6 → 257
      MTABC_N; Mitochondrial ABC-transporter N-terminal five TM region

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049778.1 Alternate UNSW_CanFamBas_1.0

      Range
      25615230..25622496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038650169.1 → XP_038506097.1  ATP-binding cassette sub-family B member 6, mitochondrial

      Conserved Domains (2) summary
      COG5265
      Location:331 → 825
      ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
      pfam16185
      Location:6 → 257
      MTABC_N; Mitochondrial ABC-transporter N-terminal five TM region

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049258.1 Alternate UU_Cfam_GSD_1.0

      Range
      25636067..25643357 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038585792.1 → XP_038441720.1  ATP-binding cassette sub-family B member 6, mitochondrial

      UniProtKB/TrEMBL
      A0A8C0TSD5, A0A8P0PCQ6
      Conserved Domains (2) summary
      COG5265
      Location:331 → 825
      ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
      pfam16185
      Location:6 → 257
      MTABC_N; Mitochondrial ABC-transporter N-terminal five TM region

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006619.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      26586363..26593649 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005640683.4 → XP_005640740.1  ATP-binding cassette sub-family B member 6, mitochondrial

      UniProtKB/TrEMBL
      A0A8C0TSD5, A0A8P0PCQ6
      Conserved Domains (2) summary
      COG5265
      Location:331 → 825
      ATM1; ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
      pfam16185
      Location:6 → 257
      MTABC_N; Mitochondrial ABC-transporter N-terminal five TM region
    Nucleotide Protein
    Heading Accession and Version

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