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    ATG3 autophagy related 3 [ Canis lupus familiaris (dog) ]

    Gene ID: 478564, updated on 5-Mar-2024

    Summary

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    Official Symbol
    ATG3provided by VGNC
    Official Full Name
    autophagy related 3provided by VGNC
    Primary source
    VGNC:VGNC:103660
    See related
    Ensembl:ENSCAFG00845029489
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ATG3 in Genome Data Viewer
    Location:
    chromosome: 33
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 33 NC_051837.1 (17290643..17316985, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 33 NC_006615.4 (17150094..17176355, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 33 NC_049254.1 (17692507..17718820, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 33 NC_049293.1 (17095504..17121791, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 33 NC_049774.1 (17142968..17169265, complement)

    Chromosome 33 - NC_051837.1Genomic Context describing neighboring genes Neighboring gene myotubularin-related protein 12-like Neighboring gene B and T lymphocyte associated Neighboring gene solute carrier family 35 member A5 Neighboring gene coiled-coil domain containing 80 Neighboring gene cell surface glycoprotein CD200 receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables Atg8-family ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in autophagosome assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in autophagy of mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nucleophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytoplasmic ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin-like-conjugating enzyme ATG3
    Names
    ATG3 autophagy related 3 homolog
    XP_038300848.1
    XP_038375149.1
    XP_038438740.1
    XP_038503137.1
    XP_535740.4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051837.1 Reference ROS_Cfam_1.0

      Range
      17290643..17316985 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038444920.1 → XP_038300848.1  ubiquitin-like-conjugating enzyme ATG3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0PB97, A0A8C0PBD7, A0A8C0QX13, A0A8I3Q098, A0A8I3Q1P1
      Related
      ENSCAFP00845040942.1, ENSCAFT00845052201.1
      Conserved Domains (2) summary
      pfam03986
      Location:8 → 135
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:38 → 308
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049293.1 Alternate UMICH_Zoey_3.1

      Range
      17095504..17121791 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038519221.1 → XP_038375149.1  ubiquitin-like-conjugating enzyme ATG3 isoform X2

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049774.1 Alternate UNSW_CanFamBas_1.0

      Range
      17142968..17169265 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038647209.1 → XP_038503137.1  ubiquitin-like-conjugating enzyme ATG3 isoform X1

      Conserved Domains (2) summary
      pfam03986
      Location:8 → 135
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:38 → 308
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049254.1 Alternate UU_Cfam_GSD_1.0

      Range
      17692507..17718820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038582812.1 → XP_038438740.1  ubiquitin-like-conjugating enzyme ATG3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0PB97, A0A8C0PBD7, A0A8C0QX13, A0A8I3Q098, A0A8I3Q1P1
      Conserved Domains (2) summary
      pfam03986
      Location:8 → 135
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:38 → 308
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006615.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      17150094..17176355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_535740.8 → XP_535740.4  ubiquitin-like-conjugating enzyme ATG3 isoform X1

      UniProtKB/TrEMBL
      A0A8C0PB97, A0A8C0PBD7, A0A8C0QX13, A0A8I3Q098, A0A8I3Q1P1
      Conserved Domains (2) summary
      pfam03986
      Location:8 → 135
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:38 → 308
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain
    Nucleotide Protein
    Heading Accession and Version

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