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    ERCC6 ERCC excision repair 6, chromatin remodeling factor [ Canis lupus familiaris (dog) ]

    Gene ID: 477747, updated on 17-Aug-2024

    Summary

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    Official Symbol
    ERCC6provided by VGNC
    Official Full Name
    ERCC excision repair 6, chromatin remodeling factorprovided by VGNC
    Primary source
    VGNC:VGNC:40445
    See related
    Ensembl:ENSCAFG00845020981
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See ERCC6 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (1534813..1608719, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (1593582..1667457, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (1502030..1575915, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (1333055..1406921, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (1370132..1444015, complement)

    Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene chromosome 28 C10orf71 homolog Neighboring gene uncharacterized LOC111093020 Neighboring gene dorsal root ganglia homeobox Neighboring gene thymosin beta-4-like Neighboring gene solute carrier family 18 member A3 Neighboring gene choline O-acetyltransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transcription-coupled nucleotide-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA excision repair protein ERCC-6
    Names
    excision repair cross-complementing rodent repair deficiency, complementation group 6
    XP_038295706.1
    XP_038370326.1
    XP_038433978.1
    XP_038498137.1
    XP_534944.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051832.1 Reference ROS_Cfam_1.0

      Range
      1534813..1608719 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038439778.1 → XP_038295706.1  DNA excision repair protein ERCC-6

      UniProtKB/TrEMBL
      A0A8C0NLW5, A0A8C0R7I2, A0A8C0TI63, A0A8I3PAF3
      Related
      ENSCAFP00845029280.1, ENSCAFT00845037377.1
      Conserved Domains (3) summary
      COG0553
      Location:456 → 1002
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18000
      Location:503 → 690
      DEXHc_ERCC6; DEXH-box helicase domain of ERCC6
      cd21397
      Location:88 → 164
      cc_ERCC-6_N; coiled-coil domain located near the N-terminus of human Excision Repair Cross Complementing 6 (ERCC-6) and related proteins

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049288.1 Alternate UMICH_Zoey_3.1

      Range
      1333055..1406921 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038514398.1 → XP_038370326.1  DNA excision repair protein ERCC-6

      Conserved Domains (3) summary
      COG0553
      Location:456 → 1002
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18000
      Location:503 → 690
      DEXHc_ERCC6; DEXH-box helicase domain of ERCC6
      cd21397
      Location:88 → 164
      cc_ERCC-6_N; coiled-coil domain located near the N-terminus of human Excision Repair Cross Complementing 6 (ERCC-6) and related proteins

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

      Range
      1370132..1444015 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038642209.1 → XP_038498137.1  DNA excision repair protein ERCC-6

      Conserved Domains (3) summary
      COG0553
      Location:456 → 1002
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18000
      Location:503 → 690
      DEXHc_ERCC6; DEXH-box helicase domain of ERCC6
      cd21397
      Location:88 → 164
      cc_ERCC-6_N; coiled-coil domain located near the N-terminus of human Excision Repair Cross Complementing 6 (ERCC-6) and related proteins

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

      Range
      1502030..1575915 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038578050.1 → XP_038433978.1  DNA excision repair protein ERCC-6

      UniProtKB/TrEMBL
      A0A8C0NLW5, A0A8C0R7I2, A0A8C0TI63, A0A8I3PAF3
      Conserved Domains (3) summary
      COG0553
      Location:456 → 1002
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18000
      Location:503 → 690
      DEXHc_ERCC6; DEXH-box helicase domain of ERCC6
      cd21397
      Location:88 → 164
      cc_ERCC-6_N; coiled-coil domain located near the N-terminus of human Excision Repair Cross Complementing 6 (ERCC-6) and related proteins

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      1593582..1667457 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_534944.6 → XP_534944.2  DNA excision repair protein ERCC-6

      UniProtKB/TrEMBL
      A0A8C0NLW5, A0A8C0R7I2, A0A8C0TI63, A0A8I3PAF3
      Conserved Domains (3) summary
      COG0553
      Location:456 → 1002
      HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
      cd18000
      Location:503 → 690
      DEXHc_ERCC6; DEXH-box helicase domain of ERCC6
      cd21397
      Location:88 → 164
      cc_ERCC-6_N; coiled-coil domain located near the N-terminus of human Excision Repair Cross Complementing 6 (ERCC-6) and related proteins
    Nucleotide Protein
    Heading Accession and Version

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