U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    EMG1 EMG1 N1-specific pseudouridine methyltransferase [ Canis lupus familiaris (dog) ]

    Gene ID: 477708, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    EMG1provided by VGNC
    Official Full Name
    EMG1 N1-specific pseudouridine methyltransferaseprovided by VGNC
    Primary source
    VGNC:VGNC:58012
    See related
    Ensembl:ENSCAFG00845025699
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See EMG1 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (38421686..38428179, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (8541114..8547601)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (8019877..8026362)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (38296590..38303061, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (38337556..38344041, complement)

    Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene complement C1s Neighboring gene lysophosphatidylcholine acyltransferase 3 Neighboring gene small nucleolar RNA U89 Neighboring gene uncharacterized LOC119866430 Neighboring gene prohibitin 2 Neighboring gene microRNA mir-141

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables rRNA (pseudouridine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in rRNA base methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of small-subunit processome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    ribosomal RNA small subunit methyltransferase NEP1
    Names
    EMG1 nucleolar protein homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051831.1 Reference ROS_Cfam_1.0

      Range
      38421686..38428179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038439128.1 → XP_038295056.1  ribosomal RNA small subunit methyltransferase NEP1

      UniProtKB/TrEMBL
      A0A8C0JNP7, A0A8C0NYH7, A0A8I3PLM1
      Related
      ENSCAFP00845035581.1, ENSCAFT00845045364.1
      Conserved Domains (1) summary
      cd18088
      Location:43 → 238
      Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049287.1 Alternate UMICH_Zoey_3.1

      Range
      38296590..38303061 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038513793.1 → XP_038369721.1  ribosomal RNA small subunit methyltransferase NEP1

      Conserved Domains (1) summary
      cd18088
      Location:43 → 238
      Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

      Range
      38337556..38344041 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038641635.1 → XP_038497563.1  ribosomal RNA small subunit methyltransferase NEP1

      Conserved Domains (1) summary
      cd18088
      Location:43 → 238
      Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

      Range
      8019877..8026362
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038576656.1 → XP_038432584.1  ribosomal RNA small subunit methyltransferase NEP1

      UniProtKB/TrEMBL
      A0A8C0JNP7, A0A8C0NYH7, A0A8I3PLM1
      Conserved Domains (1) summary
      cd18088
      Location:43 → 238
      Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      8541114..8547601
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_848280.6 → XP_853373.1  ribosomal RNA small subunit methyltransferase NEP1

      UniProtKB/TrEMBL
      A0A8C0JNP7, A0A8C0NYH7, A0A8I3PLM1
      Conserved Domains (1) summary
      cd18088
      Location:43 → 238
      Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.