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    CNTN1 contactin 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 477641, updated on 17-Aug-2024

    Summary

    Official Symbol
    CNTN1provided by VGNC
    Official Full Name
    contactin 1provided by VGNC
    Primary source
    VGNC:VGNC:39432
    See related
    Ensembl:ENSCAFG00845030614
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    NEW
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    Genomic context

    See CNTN1 in Genome Data Viewer
    Location:
    chromosome: 27
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 27 NC_051831.1 (12856273..13206411, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 27 NC_006609.4 (33445834..33709949)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 27 NC_049248.1 (33541381..33890677)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 27 NC_049287.1 (12671345..12901312, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 27 NC_049768.1 (12704418..13054458, complement)

    Chromosome 27 - NC_051831.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119866400 Neighboring gene uncharacterized LOC119866399 Neighboring gene PDZ domain containing ring finger 4 Neighboring gene elongation factor 1-alpha 1-like Neighboring gene small nucleolar RNA U3 Neighboring gene BH3 interacting domain death agonist pseudogene

    Genomic regions, transcripts, and products

    Pathways from PubChem

    General protein information

    Preferred Names
    contactin-1; LOW QUALITY PROTEIN: contactin-1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051831.1 Reference ROS_Cfam_1.0

      Range
      12856273..13206411 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038438503.1XP_038294431.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
      Related
      ENSCAFP00845042676.1, ENSCAFT00845054315.1
      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    2. XM_038438505.1XP_038294433.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
      Related
      ENSCAFP00845042723.1, ENSCAFT00845054371.1
      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    3. XM_038438504.1XP_038294432.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    4. XM_038438506.1XP_038294434.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    5. XM_038438507.1XP_038294435.1  contactin-1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0P6M5, A0A8C0TLI1, A0A8I3Q4B4
      Related
      ENSCAFP00845042729.1, ENSCAFT00845054379.1
      Conserved Domains (6) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503602
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049287.1 Alternate UMICH_Zoey_3.1

      Range
      12671345..12901312 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038513188.1XP_038369116.1  LOW QUALITY PROTEIN: contactin-1 isoform X1

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049768.1 Alternate UNSW_CanFamBas_1.0

      Range
      12704418..13054458 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038640965.1XP_038496893.1  contactin-1 isoform X1

      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    2. XM_038640967.1XP_038496895.1  contactin-1 isoform X1

      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    3. XM_038640966.1XP_038496894.1  contactin-1 isoform X1

      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    4. XM_038640968.1XP_038496896.1  contactin-1 isoform X1

      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    5. XM_038640969.1XP_038496897.1  contactin-1 isoform X2

      Conserved Domains (6) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503602
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049248.1 Alternate UU_Cfam_GSD_1.0

      Range
      33541381..33890677
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038577318.1XP_038433246.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0THK9
      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    2. XM_038577321.1XP_038433249.1  contactin-1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0TLI1
      Conserved Domains (6) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503602
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    3. XM_038577320.1XP_038433248.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0THK9
      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    4. XM_038577319.1XP_038433247.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0THK9
      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      33445834..33709949
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038459975.1XP_038315903.1  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    2. XM_038459976.1XP_038315904.1  contactin-1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0P6M5, A0A8C0TLI1, A0A8I3Q4B4
      Conserved Domains (6) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503602
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain
    3. XM_005636975.4XP_005637032.2  contactin-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0P5A8, A0A8C0THK9, A0A8I3QYG1
      Conserved Domains (8) summary
      cd05851
      Location:241328
      IgI_3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1; member of the I-set of Ig superfamily (IgSF) domains
      cd00063
      Location:610697
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
      pfam00041
      Location:811893
      fn3; Fibronectin type III domain
      cd00096
      Location:4246
      Ig; Ig strand A [structural motif]
      cd04970
      Location:503601
      Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
      cd05727
      Location:142230
      Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2, and similar domains
      cd05852
      Location:413501
      Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
      cl11960
      Location:40134
      Ig; Immunoglobulin domain