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    RPN1 ribophorin I [ Canis lupus familiaris (dog) ]

    Gene ID: 476516, updated on 17-Aug-2024

    Summary

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    Official Symbol
    RPN1provided by VGNC
    Official Full Name
    ribophorin Iprovided by VGNC
    Primary source
    VGNC:VGNC:45721
    See related
    Ensembl:ENSCAFG00845019047
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Also known as
    RPN-I
    Orthologs
    human mouse all
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    Genomic context

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    See RPN1 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 20 NC_051824.1 (2631950..2660570, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 20 NC_006602.4 (2647475..2676092, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 20 NC_049241.1 (2639667..2668086, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 20 NC_049280.1 (2352624..2381238, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 20 NC_049761.1 (2679052..2707535, complement)

    Chromosome 20 - NC_051824.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase makorin-1-like Neighboring gene E3 ubiquitin-protein ligase makorin-1-like Neighboring gene uncharacterized LOC119864620 Neighboring gene uncharacterized LOC111091224 Neighboring gene small nuclear ribonucleoprotein G-like Neighboring gene RAB7A, member RAS oncogene family

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Oligosaccharyltransferase isoforms that contain different catalytic STT3 subunits have distinct enzymatic properties. Kelleher DJ, et al. Mol Cell, 2003 Jul. PMID 12887896
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in protein N-linked glycosylation via asparagine IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of oligosaccharyltransferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
    Names
    ribophorin-1
    XP_038282692.1
    XP_038358500.1
    XP_038421410.1
    XP_038485531.1
    XP_848830.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051824.1 Reference ROS_Cfam_1.0

      Range
      2631950..2660570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038426764.1 → XP_038282692.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

      UniProtKB/Swiss-Prot
      E2RQ08
      UniProtKB/TrEMBL
      A0A8C0JUK6, A0A8C0TZ24, A0A8P0N6Y1
      Related
      ENSCAFP00845026327.1, ENSCAFT00845033627.1
      Conserved Domains (1) summary
      pfam04597
      Location:32 → 457
      Ribophorin_I; Ribophorin I

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049280.1 Alternate UMICH_Zoey_3.1

      Range
      2352624..2381238 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038502572.1 → XP_038358500.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

      Conserved Domains (1) summary
      pfam04597
      Location:32 → 457
      Ribophorin_I; Ribophorin I

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049761.1 Alternate UNSW_CanFamBas_1.0

      Range
      2679052..2707535 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038629603.1 → XP_038485531.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049241.1 Alternate UU_Cfam_GSD_1.0

      Range
      2639667..2668086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038565482.1 → XP_038421410.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

      UniProtKB/Swiss-Prot
      E2RQ08
      UniProtKB/TrEMBL
      A0A8C0JUK6, A0A8C0TZ24, A0A8P0N6Y1
      Conserved Domains (1) summary
      pfam04597
      Location:32 → 457
      Ribophorin_I; Ribophorin I

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006602.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      2647475..2676092 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_843737.6 → XP_848830.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1

      UniProtKB/Swiss-Prot
      E2RQ08
      UniProtKB/TrEMBL
      A0A8C0JUK6, A0A8C0TZ24, A0A8P0N6Y1
      Conserved Domains (1) summary
      pfam04597
      Location:32 → 457
      Ribophorin_I; Ribophorin I
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E2RQ08.1 GenPept UniProtKB/Swiss-Prot:E2RQ08

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    Research Materials