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    SNX9 sorting nexin 9 [ Canis lupus familiaris (dog) ]

    Gene ID: 476254, updated on 17-Aug-2024

    Summary

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    Official Symbol
    SNX9provided by VGNC
    Official Full Name
    sorting nexin 9provided by VGNC
    Primary source
    VGNC:VGNC:46645
    See related
    Ensembl:ENSCAFG00845000878
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See SNX9 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (47532216..47644795)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (48191531..48302806)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (47840744..47952026)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (47412288..47523565)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (47282028..47393272)

    Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene zinc finger DHHC-type palmitoyltransferase 14 Neighboring gene protein SET-like Neighboring gene voltage-dependent anion-selective channel protein 3-like Neighboring gene uncharacterized LOC111095864 Neighboring gene uncharacterized LOC111090679 Neighboring gene synaptojanin 2 Neighboring gene uncharacterized LOC119870761

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables phosphatidylinositol binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cleavage furrow formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endosomal transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cell cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitotic cytokinesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in plasma membrane tubulation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sorting nexin-9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051805.1 Reference ROS_Cfam_1.0

      Range
      47532216..47644795
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038654519.1 → XP_038510447.1  sorting nexin-9 isoform X2

      UniProtKB/TrEMBL
      A0A8C0T840, A0A8I3MFU3, A0A8P0P3Q0
      Related
      ENSCAFP00845001209.1, ENSCAFT00845001537.1
      Conserved Domains (3) summary
      cd07285
      Location:260 → 385
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:396 → 605
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:15 → 71
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

    2. XM_038654518.1 → XP_038510446.1  sorting nexin-9 isoform X1

      UniProtKB/TrEMBL
      A0A8C0T5W7
      Related
      ENSCAFP00845001171.1, ENSCAFT00845001493.1
      Conserved Domains (4) summary
      cd07285
      Location:275 → 400
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:411 → 620
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:2 → 57
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
      COG5391
      Location:128 → 382
      COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049261.1 Alternate UMICH_Zoey_3.1

      Range
      47412288..47523565
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038465761.1 → XP_038321689.1  sorting nexin-9 isoform X2

      Conserved Domains (3) summary
      cd07285
      Location:260 → 385
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:396 → 605
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:15 → 71
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

    2. XM_038465760.1 → XP_038321688.1  sorting nexin-9 isoform X1

      Conserved Domains (4) summary
      cd07285
      Location:275 → 400
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:411 → 620
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:2 → 57
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
      COG5391
      Location:128 → 382
      COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

      Range
      47282028..47393272
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038590726.1 → XP_038446654.1  sorting nexin-9 isoform X2

      Conserved Domains (3) summary
      cd07285
      Location:260 → 385
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:396 → 605
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:15 → 71
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

    2. XM_038590725.1 → XP_038446653.1  sorting nexin-9 isoform X1

      Conserved Domains (4) summary
      cd07285
      Location:275 → 400
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:411 → 620
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:2 → 57
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
      COG5391
      Location:128 → 382
      COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

      Range
      47840744..47952026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038526430.1 → XP_038382358.1  sorting nexin-9 isoform X2

      UniProtKB/TrEMBL
      A0A8C0T840, A0A8I3MFU3, A0A8P0P3Q0
      Conserved Domains (3) summary
      cd07285
      Location:260 → 385
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:396 → 605
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:15 → 71
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

    2. XM_038526429.1 → XP_038382357.1  sorting nexin-9 isoform X1

      UniProtKB/TrEMBL
      A0A8C0T5W7
      Conserved Domains (4) summary
      cd07285
      Location:275 → 400
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:411 → 620
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:2 → 57
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
      COG5391
      Location:128 → 382
      COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      48191531..48302806
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005615541.2 → XP_005615598.1  sorting nexin-9 isoform X2

      UniProtKB/TrEMBL
      A0A8C0T840, A0A8I3MFU3, A0A8P0P3Q0
      Conserved Domains (3) summary
      cd07285
      Location:260 → 385
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:396 → 605
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:15 → 71
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9

    2. XM_005615539.3 → XP_005615596.1  sorting nexin-9 isoform X1

      UniProtKB/TrEMBL
      A0A8C0T5W7
      Conserved Domains (4) summary
      cd07285
      Location:275 → 400
      PX_SNX9; The phosphoinositide binding Phox Homology domain of Sorting Nexin 9
      cd07668
      Location:411 → 620
      BAR_SNX9; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9
      cd11898
      Location:2 → 57
      SH3_SNX9; Src Homology 3 domain of Sorting nexin 9
      COG5391
      Location:128 → 382
      COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
    Nucleotide Protein
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