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    LMAN1 lectin, mannose binding 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 476186, updated on 17-Aug-2024

    Summary

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    Official Symbol
    LMAN1provided by VGNC
    Official Full Name
    lectin, mannose binding 1provided by VGNC
    Primary source
    VGNC:VGNC:42706
    See related
    Ensembl:ENSCAFG00845000443
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See LMAN1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 1 NC_051805.1 (16746349..16775132)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 1 NC_006583.4 (17844723..17873524)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 1 NC_049222.1 (16964186..16993012)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 1 NC_049261.1 (16781955..16810766)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 1 NC_049742.1 (16702460..16731329)

    Chromosome 1 - NC_051805.1Genomic Context describing neighboring genes Neighboring gene collagen and calcium binding EGF domains 1 Neighboring gene uncharacterized LOC119870717 Neighboring gene uncharacterized LOC119872244 Neighboring gene complexin 4 Neighboring gene retina and anterior neural fold homeobox

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative radiation hybrid map of canine chromosome 1 incorporating SNP and indel polymorphisms. Housley DJ, et al. Genomics, 2004 Aug. PMID 15233990
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables D-mannose binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in Golgi organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in COPII-coated ER to Golgi transport vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ERGIC-53

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051805.1 Reference ROS_Cfam_1.0

      Range
      16746349..16775132
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038654013.1 → XP_038509941.1  protein ERGIC-53 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MS49, A0A8I3MAV2
      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    2. XM_038654014.1 → XP_038509942.1  protein ERGIC-53 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MS49, A0A8I3MAV2
      Related
      ENSCAFP00845000613.1, ENSCAFT00845000820.1
      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    3. XM_038654015.1 → XP_038509943.1  protein ERGIC-53 isoform X2

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:347 → 422
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049261.1 Alternate UMICH_Zoey_3.1

      Range
      16781955..16810766
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038465274.1 → XP_038321202.1  protein ERGIC-53 isoform X1

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    2. XM_038465275.1 → XP_038321203.1  protein ERGIC-53 isoform X1

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    3. XM_038465276.1 → XP_038321204.1  protein ERGIC-53 isoform X2

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:347 → 422
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049742.1 Alternate UNSW_CanFamBas_1.0

      Range
      16702460..16731329
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038590190.1 → XP_038446118.1  protein ERGIC-53 isoform X1

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    2. XM_038590193.1 → XP_038446121.1  protein ERGIC-53 isoform X1

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    3. XM_038590191.1 → XP_038446119.1  protein ERGIC-53 isoform X1

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    4. XM_038590194.1 → XP_038446122.1  protein ERGIC-53 isoform X2

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:347 → 422
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049222.1 Alternate UU_Cfam_GSD_1.0

      Range
      16964186..16993012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038525880.1 → XP_038381808.1  protein ERGIC-53 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MS49, A0A8I3MAV2
      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    2. XM_038525881.1 → XP_038381809.1  protein ERGIC-53 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MS49, A0A8I3MAV2
      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    3. XM_038525882.1 → XP_038381810.1  protein ERGIC-53 isoform X2

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:347 → 422
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006583.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      17844723..17873524
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_533390.6 → XP_533390.2  protein ERGIC-53 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MS49, A0A8I3MAV2
      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    2. XM_014108254.2 → XP_013963729.1  protein ERGIC-53 isoform X1

      UniProtKB/TrEMBL
      A0A8C0MS49, A0A8I3MAV2
      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:348 → 423
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]

    3. XM_005615362.3 → XP_005615419.1  protein ERGIC-53 isoform X2

      Conserved Domains (2) summary
      cd06902
      Location:52 → 276
      lectin_ERGIC-53_ERGL; ERGIC-53 and ERGL type 1 transmembrane proteins, N-terminal lectin domain
      COG2882
      Location:347 → 422
      FliJ; Flagellar biosynthesis chaperone FliJ [Cell motility]
    Nucleotide Protein
    Heading Accession and Version

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