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    PTN pleiotrophin [ Canis lupus familiaris (dog) ]

    Gene ID: 475509, updated on 17-Aug-2024

    Summary

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    Official Symbol
    PTNprovided by VGNC
    Official Full Name
    pleiotrophinprovided by VGNC
    Primary source
    VGNC:VGNC:45160
    See related
    Ensembl:ENSCAFG00845008663
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See PTN in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 16 NC_051820.1 (11248309..11349640)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 16 NC_006598.4 (12295731..12396391)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 16 NC_049237.1 (10950643..11051479)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 16 NC_049276.1 (11708020..11809056)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 16 NC_049757.1 (10807935..10909300)

    Chromosome 16 - NC_051820.1Genomic Context describing neighboring genes Neighboring gene cAMP responsive element binding protein 3 like 2 Neighboring gene 60S ribosomal protein L17-like Neighboring gene uncharacterized LOC111090242 Neighboring gene diacylglycerol kinase iota Neighboring gene uncharacterized LOC111090243 Neighboring gene cholinergic receptor muscarinic 2 Neighboring gene WAS/WASL-interacting protein family member 3-like Neighboring gene microRNA mir-490

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables growth factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pleiotrophin
    Names
    pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051820.1 Reference ROS_Cfam_1.0

      Range
      11248309..11349640
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038689142.1 → XP_038545070.1  pleiotrophin

      UniProtKB/TrEMBL
      A0A8C0SSP7, A0A8I3N6G8, A0A8P0N6A8
      Related
      ENSCAFP00845011867.1, ENSCAFT00845015283.1
      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

    2. XM_038689143.1 → XP_038545071.1  pleiotrophin

      UniProtKB/TrEMBL
      A0A8C0SSP7, A0A8I3N6G8, A0A8P0N6A8
      Related
      ENSCAFP00845011888.1, ENSCAFT00845015310.1
      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049276.1 Alternate UMICH_Zoey_3.1

      Range
      11708020..11809056
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038497126.1 → XP_038353054.1  pleiotrophin

      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

    2. XM_038497127.1 → XP_038353055.1  pleiotrophin

      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049757.1 Alternate UNSW_CanFamBas_1.0

      Range
      10807935..10909300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038623433.1 → XP_038479361.1  pleiotrophin

      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

    2. XM_038623434.1 → XP_038479362.1  pleiotrophin

      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049237.1 Alternate UU_Cfam_GSD_1.0

      Range
      10950643..11051479
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038559442.1 → XP_038415370.1  pleiotrophin

      UniProtKB/TrEMBL
      A0A8C0SSP7, A0A8I3N6G8, A0A8P0N6A8
      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

    2. XM_038559443.1 → XP_038415371.1  pleiotrophin

      UniProtKB/TrEMBL
      A0A8C0SSP7, A0A8I3N6G8, A0A8P0N6A8
      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006598.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      12295731..12396391
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038452295.1 → XP_038308223.1  pleiotrophin

      UniProtKB/TrEMBL
      A0A8C0SSP7, A0A8I3N6G8, A0A8P0N6A8
      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain

    2. XM_532732.6 → XP_532732.2  pleiotrophin

      See identical proteins and their annotated locations for XP_532732.2

      UniProtKB/TrEMBL
      A0A8C0SSP7, A0A8I3N6G8, A0A8P0N6A8
      Conserved Domains (1) summary
      cl02505
      Location:47 → 131
      PTN_MK_N; PTN/MK heparin-binding protein family, N-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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