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    AIF1 allograft inflammatory factor 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 474841, updated on 17-Aug-2024

    Summary

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    Official Symbol
    AIF1provided by VGNC
    Official Full Name
    allograft inflammatory factor 1provided by VGNC
    Primary source
    VGNC:VGNC:37735
    See related
    Ensembl:ENSCAFG00845010791
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See AIF1 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 12 NC_051816.1 (1249600..1251430)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 12 NC_006594.4 (1240799..1242629)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 12 NC_049233.1 (1243086..1244917)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 12 NC_049272.1 (1108905..1110735)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 12 NC_049753.1 (1176225..1178056)

    Chromosome 12 - NC_051816.1Genomic Context describing neighboring genes Neighboring gene leukocyte specific transcript 1 Neighboring gene natural cytotoxicity triggering receptor 3 Neighboring gene small nucleolar RNA SNORA38 Neighboring gene proline rich coiled-coil 2A Neighboring gene BAG cochaperone 6 Neighboring gene apolipoprotein M

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ruffle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ruffle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    allograft inflammatory factor 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051816.1 Reference ROS_Cfam_1.0

      Range
      1249600..1251430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038682778.1 → XP_038538706.1  allograft inflammatory factor 1

      UniProtKB/TrEMBL
      A0A8C0R4S6, A0A8C0YTZ5, A0A8I3NIF7
      Related
      ENSCAFP00845014880.1, ENSCAFT00845019047.1
      Conserved Domains (1) summary
      PTZ00184
      Location:46 → 113
      PTZ00184; calmodulin; Provisional

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049272.1 Alternate UMICH_Zoey_3.1

      Range
      1108905..1110735
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038492748.1 → XP_038348676.1  allograft inflammatory factor 1

      Conserved Domains (1) summary
      PTZ00184
      Location:46 → 113
      PTZ00184; calmodulin; Provisional

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049753.1 Alternate UNSW_CanFamBas_1.0

      Range
      1176225..1178056
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038617210.1 → XP_038473138.1  allograft inflammatory factor 1

      Conserved Domains (1) summary
      PTZ00184
      Location:46 → 113
      PTZ00184; calmodulin; Provisional

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049233.1 Alternate UU_Cfam_GSD_1.0

      Range
      1243086..1244917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038553313.1 → XP_038409241.1  allograft inflammatory factor 1

      UniProtKB/TrEMBL
      A0A8C0R4S6, A0A8C0YTZ5, A0A8I3NIF7
      Conserved Domains (1) summary
      PTZ00184
      Location:46 → 113
      PTZ00184; calmodulin; Provisional

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006594.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      1240799..1242629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_532072.7 → XP_532072.2  allograft inflammatory factor 1

      UniProtKB/TrEMBL
      A0A8C0R4S6, A0A8C0YTZ5, A0A8I3NIF7
      Conserved Domains (1) summary
      PTZ00184
      Location:46 → 113
      PTZ00184; calmodulin; Provisional
    Nucleotide Protein
    Heading Accession and Version

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