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    CLN8 CLN8 transmembrane ER and ERGIC protein [ Pan troglodytes (chimpanzee) ]

    Gene ID: 463962, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CLN8provided by VGNC
    Official Full Name
    CLN8 transmembrane ER and ERGIC proteinprovided by VGNC
    Primary source
    VGNC:VGNC:14811
    See related
    Ensembl:ENSPTRG00000019941
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See CLN8 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 7 NC_072405.2 (8688229..8707294)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 8 NC_072406.1 (11827347..11846315)

    Chromosome 7 - NC_072405.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC129135630 Neighboring gene uncharacterized LOC104007511 Neighboring gene uncharacterized LOC107972932 Neighboring gene uncharacterized LOC134810644

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ceramide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in nervous system development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phospholipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein CLN8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072405.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      8688229..8707294
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009454749.5 → XP_009453024.2  protein CLN8

      UniProtKB/TrEMBL
      H2QVP6, K7ASK0
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains

    2. XM_519584.9 → XP_519584.3  protein CLN8

      UniProtKB/TrEMBL
      H2QVP6, K7ASK0
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains

    3. XM_009454751.5 → XP_009453026.2  protein CLN8

      UniProtKB/TrEMBL
      H2QVP6, K7ASK0
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains

    4. XM_009454754.5 → XP_009453029.2  protein CLN8

      UniProtKB/TrEMBL
      H2QVP6, K7ASK0
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains

    5. XM_009454752.5 → XP_009453027.2  protein CLN8

      UniProtKB/TrEMBL
      H2QVP6, K7ASK0
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains

    6. XM_009454753.5 → XP_009453028.2  protein CLN8

      UniProtKB/TrEMBL
      H2QVP6, K7ASK0
      Related
      ENSPTRP00000074709.1
      Conserved Domains (1) summary
      smart00724
      Location:64 → 262
      TLC; TRAM, LAG1 and CLN8 homology domains

    7. XM_063816108.1 → XP_063672178.1  protein CLN8

      UniProtKB/TrEMBL
      H2QVP6, K7ASK0
    Nucleotide Protein
    Heading Accession and Version

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