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    CAPN10 calpain 10 [ Pan troglodytes (chimpanzee) ]

    Gene ID: 460069, updated on 17-Aug-2024

    Summary

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    Official Symbol
    CAPN10provided by VGNC
    Official Full Name
    calpain 10provided by VGNC
    Primary source
    VGNC:VGNC:10626
    Locus tag
    CK820_G0052009
    See related
    Ensembl:ENSPTRG00000013108
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pan troglodytes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
    Orthologs
    human mouse all
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    Genomic context

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    See CAPN10 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 13 NC_072411.2 (142855509..142870632)
    RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 2B NC_072400.1 (142769293..142781792)

    Chromosome 13 - NC_072411.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100609955 Neighboring gene arginyl aminopeptidase like 1 Neighboring gene uncharacterized LOC104005439 Neighboring gene G protein-coupled receptor 35 Neighboring gene uncharacterized LOC134807958

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium-dependent cysteine-type endopeptidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteolysis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calpain-10
    XP_016806372.1
    XP_016806373.1
    XP_016806374.1
    XP_063647071.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Genomic

    1. NC_072411.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

      Range
      142855509..142870632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_016950883.4 → XP_016806372.1  calpain-10 isoform X1

      UniProtKB/TrEMBL
      A0A2I3RII2, A0A2J8IYJ2, A0A6D2W9T5, H2QJQ9, K7CKA1
      Related
      ENSPTRP00000022437.5
      Conserved Domains (2) summary
      cd00044
      Location:2 → 296
      CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
      cd00214
      Location:335 → 496
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

    2. XM_016950885.4 → XP_016806374.1  calpain-10 isoform X4

      UniProtKB/TrEMBL
      A0A2I3S4Y8, A0A2J8IYK5, A0A2J8IYL5, A0A6D2W7L4
      Related
      ENSPTRP00000071634.1
      Conserved Domains (2) summary
      cd00044
      Location:2 → 296
      CysPc; Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
      cd00214
      Location:335 → 498
      Calpain_III; Calpain, subdomain III. Calpains are calcium-activated cytoplasmic cysteine proteinases, participate in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction. Catalytic domain and the two calmodulin-like domains are ...

    3. XM_063791001.1 → XP_063647071.1  calpain-10 isoform X3

    4. XM_016950884.3 → XP_016806373.1  calpain-10 isoform X2

      UniProtKB/TrEMBL
      A0A2I3RII2
    Nucleotide Protein
    Heading Accession and Version

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